LOCUS       NM_001081046            1744 bp    mRNA    linear   ROD 04-AUG-2023
DEFINITION  Mus musculus EF-hand calcium binding domain 3 (Efcab3), mRNA.
ACCESSION   NM_001081046 XM_109772
VERSION     NM_001081046.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1744)
  AUTHORS   Lilue J, Doran AG, Fiddes IT, Abrudan M, Armstrong J, Bennett R,
            Chow W, Collins J, Collins S, Czechanski A, Danecek P, Diekhans M,
            Dolle DD, Dunn M, Durbin R, Earl D, Ferguson-Smith A, Flicek P,
            Flint J, Frankish A, Fu B, Gerstein M, Gilbert J, Goodstadt L,
            Harrow J, Howe K, Ibarra-Soria X, Kolmogorov M, Lelliott CJ, Logan
            DW, Loveland J, Mathews CE, Mott R, Muir P, Nachtweide S, Navarro
            FCP, Odom DT, Park N, Pelan S, Pham SK, Quail M, Reinholdt L,
            Romoth L, Shirley L, Sisu C, Sjoberg-Herrera M, Stanke M, Steward
            C, Thomas M, Threadgold G, Thybert D, Torrance J, Wong K, Wood J,
            Yalcin B, Yang F, Adams DJ, Paten B and Keane TM.
  TITLE     Sixteen diverse laboratory mouse reference genomes define
            strain-specific haplotypes and novel functional loci
  JOURNAL   Nat Genet 50 (11), 1574-1583 (2018)
   PUBMED   30275530
REFERENCE   2  (bases 1 to 1744)
  AUTHORS   Alvarez-Dominguez JR, Zhang X and Hu W.
  TITLE     Widespread and dynamic translational control of red blood cell
            development
  JOURNAL   Blood 129 (5), 619-629 (2017)
   PUBMED   27899360
REFERENCE   3  (bases 1 to 1744)
  AUTHORS   Miyata H, Castaneda JM, Fujihara Y, Yu Z, Archambeault DR, Isotani
            A, Kiyozumi D, Kriseman ML, Mashiko D, Matsumura T, Matzuk RM, Mori
            M, Noda T, Oji A, Okabe M, Prunskaite-Hyyrylainen R, Ramirez-Solis
            R, Satouh Y, Zhang Q, Ikawa M and Matzuk MM.
  TITLE     Genome engineering uncovers 54 evolutionarily conserved and
            testis-enriched genes that are not required for male fertility in
            mice
  JOURNAL   Proc Natl Acad Sci U S A 113 (28), 7704-7710 (2016)
   PUBMED   27357688
REFERENCE   4  (bases 1 to 1744)
  AUTHORS   Alvarez-Dominguez JR, Hu W, Yuan B, Shi J, Park SS, Gromatzky AA,
            van Oudenaarden A and Lodish HF.
  TITLE     Global discovery of erythroid long noncoding RNAs reveals novel
            regulators of red cell maturation
  JOURNAL   Blood 123 (4), 570-581 (2014)
   PUBMED   24200680
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AL627235.12.
            
            [WARNING] On Oct 17, 2023 this sequence was replaced by
            NM_001081046.2.
            
            On Feb 6, 2007 this sequence version replaced XM_109772.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC050801.1, AK014861.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-285               AL627235.12        51811-52095
            286-370             AL627235.12        53160-53244
            371-447             AL627235.12        55437-55513
            448-591             AL627235.12        59506-59649
            592-663             AL627235.12        61804-61875
            664-784             AL627235.12        65939-66059
            785-966             AL627235.12        68361-68542
            967-1151            AL627235.12        68843-69027
            1152-1274           AL627235.12        71382-71504
            1275-1744           AL627235.12        76660-77129
FEATURES             Location/Qualifiers
     source          1..1744
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 68.61 cM"
     gene            1..1744
                     /gene="Efcab3"
                     /gene_synonym="4921510J17Rik"
                     /note="EF-hand calcium binding domain 3"
                     /db_xref="GeneID:70894"
                     /db_xref="MGI:MGI:1918144"
     exon            1..285
                     /gene="Efcab3"
                     /gene_synonym="4921510J17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            286..370
                     /gene="Efcab3"
                     /gene_synonym="4921510J17Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             303..1601
                     /gene="Efcab3"
                     /gene_synonym="4921510J17Rik"
                     /codon_start=1
                     /product="EF-hand calcium-binding domain-containing
                     protein 3"
                     /protein_id="NP_001074515.1"
                     /db_xref="CCDS:CCDS36355.1"
                     /db_xref="GeneID:70894"
                     /db_xref="MGI:MGI:1918144"
                     /translation="MAVSEIKATMKLKPLKAPVFHKRDKDLRGSFSDHLKHKESKLSP
                     AQLEAFRNAYNFFTKDRTGCIDSHGLISTIAKLGMNLNTYDIYNELKCADLDRDGKIN
                     FSDFINVLTDKKLFLKAVVPEKKICLDLANNPGILLFEILSKFVETSSLHRKDIIELV
                     SYFRKRFQESHSEIMWSSYGRRGLKSEICSPPRSSTAAFANSARISIMKERDLYKFLE
                     ALKRCNLRTDSPYSKIPVFPLFPDVDGTVMGKPFKDTQKIEMLRRKEPLTFFEDYFFN
                     KRDWKTQAMNVKPLKSASGYSDDILAIDHLFKKKQHWTVTDAAAIKQHVKKATESYNL
                     GIALDHRKEMLNLWKKIRGDLVGIESNNESFYNTFSTYTWSWNVCQELLSAKDLRLHD
                     ASMNKSSPSNSGLSSPSDFSESDPETGRKRKRKSSRGFRQ"
     exon            371..447
                     /gene="Efcab3"
                     /gene_synonym="4921510J17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            448..591
                     /gene="Efcab3"
                     /gene_synonym="4921510J17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            592..663
                     /gene="Efcab3"
                     /gene_synonym="4921510J17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            664..784
                     /gene="Efcab3"
                     /gene_synonym="4921510J17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            785..966
                     /gene="Efcab3"
                     /gene_synonym="4921510J17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            967..1151
                     /gene="Efcab3"
                     /gene_synonym="4921510J17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1152..1274
                     /gene="Efcab3"
                     /gene_synonym="4921510J17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1275..1744
                     /gene="Efcab3"
                     /gene_synonym="4921510J17Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtggtttaac attattcatt attcccaagc tagcagccct atctgcttgt cgtgagcctc
       61 cagatacact ctatcgttta gaaagctaac agcccctggt ctgtagactg tgtttcttag
      121 actatgcaga agggtaaagg gggggctaga gaagctgtat ctgtgaaaac agcctgtgca
      181 agacgctacc cactctgctt ttatgggaaa gcagggaact cataattgtc agagcaggga
      241 cgtgtgttcc agaaggaaat cctcagaaaa catacttact acgtgacaga gcttctagcc
      301 aaatggcagt ttcagaaatt aaagccacga tgaagctaaa gcccttaaaa gcacctgtct
      361 ttcacaagag agataaagat ttgcgaggat ctttctcaga ccatttaaag cacaaagaat
      421 caaagctgag tcctgcacaa cttgaagcct tccgtaatgc ttacaacttc ttcaccaagg
      481 atagaactgg ctgtattgat tcacacggat tgataagcac catagcaaaa ctgggaatga
      541 atctaaacac gtacgatatc tacaatgaat taaaatgtgc tgatctcgac agggacggta
      601 agatcaactt ctcagatttt ataaatgtgt tgacagataa gaaactcttc ctcaaggctg
      661 tggttccaga aaagaaaata tgcttagatt tagctaacaa cccaggaatc ttgttgtttg
      721 aaatcctatc aaaatttgta gaaacctcgt ccctgcacag aaaggatata atagagctag
      781 taagctattt ccgaaaaagg ttccaggaga gccactcaga aataatgtgg agttcgtatg
      841 ggagaagggg cctaaagtca gagatctgct ctccccctcg ctcgagcact gctgcctttg
      901 ccaactctgc taggatctcc ataatgaaag aaagggattt gtataagttt ctcgaagccc
      961 tcaaacggtg taatctccgt acagatagcc catactcaaa aatacctgtg tttccgttgt
     1021 ttcctgatgt ggatgggacg gtgatgggaa aaccatttaa agacacacaa aaaatagaga
     1081 tgctaaggag aaaggagcct ctgactttct ttgaggacta ttttttcaat aaaagagatt
     1141 ggaaaacaca ggccatgaat gtgaaacctc tcaagtctgc ctcaggctat tcagatgaca
     1201 tcttagccat tgaccacctg ttcaagaaaa agcaacattg gactgtgact gatgcggctg
     1261 ctatcaaaca gcatgtaaag aaagccacgg agagttataa cttaggaatt gcccttgacc
     1321 accggaaaga aatgctgaac ctctggaaga agattcgagg ggatttggtt gggatcgaaa
     1381 gcaacaatga gtccttttac aacacctttt cgacctacac ctggtcctgg aacgtctgcc
     1441 aagagctgct ctccgctaag gacctccgct tgcacgacgc cagcatgaac aagagttccc
     1501 cctccaactc tgggttatct tccccatcgg acttcagtga gtctgacccg gagacgggga
     1561 ggaagaggaa acggaaaagt tccagagggt ttcggcaatg aaaagcctac gttttctaaa
     1621 cagctcttcg aaaaccgctt tccatagtaa tcaaaagtat ggtttcttgc ttttatctat
     1681 tacatgccta ggtggaaatt ttgacatctt atggattccg accagtaaaa acctttaaat
     1741 ccgg
//
