LOCUS       NM_001254724            1199 bp    mRNA    linear   ROD 10-MAY-2024
DEFINITION  Mus musculus EF-hand calcium binding domain 15 (Efcab15), mRNA.
ACCESSION   NM_001254724 XM_003085507 XM_003085756
VERSION     NM_001254724.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1199)
  AUTHORS   Mural,R.J., Adams,M.D., Myers,E.W., Smith,H.O., Miklos,G.L.,
            Wides,R., Halpern,A., Li,P.W., Sutton,G.G., Nadeau,J.,
            Salzberg,S.L., Holt,R.A., Kodira,C.D., Lu,F., Chen,L., Deng,Z.,
            Evangelista,C.C., Gan,W., Heiman,T.J., Li,J., Li,Z., Merkulov,G.V.,
            Milshina,N.V., Naik,A.K., Qi,R., Shue,B.C., Wang,A., Wang,J.,
            Wang,X., Yan,X., Ye,J., Yooseph,S., Zhao,Q., Zheng,L., Zhu,S.C.,
            Biddick,K., Bolanos,R., Delcher,A.L., Dew,I.M., Fasulo,D.,
            Flanigan,M.J., Huson,D.H., Kravitz,S.A., Miller,J.R., Mobarry,C.M.,
            Reinert,K., Remington,K.A., Zhang,Q., Zheng,X.H., Nusskern,D.R.,
            Lai,Z., Lei,Y., Zhong,W., Yao,A., Guan,P., Ji,R.R., Gu,Z.,
            Wang,Z.Y., Zhong,F., Xiao,C., Chiang,C.C., Yandell,M.,
            Wortman,J.R., Amanatides,P.G., Hladun,S.L., Pratts,E.C.,
            Johnson,J.E., Dodson,K.L., Woodford,K.J., Evans,C.A., Gropman,B.,
            Rusch,D.B., Venter,E., Wang,M., Smith,T.J., Houck,J.T.,
            Tompkins,D.E., Haynes,C., Jacob,D., Chin,S.H., Allen,D.R.,
            Dahlke,C.E., Sanders,R., Li,K., Liu,X., Levitsky,A.A.,
            Majoros,W.H., Chen,Q., Xia,A.C., Lopez,J.R., Donnelly,M.T.,
            Newman,M.H., Glodek,A., Kraft,C.L., Nodell,M., Ali,F., An,H.J.,
            Baldwin-Pitts,D., Beeson,K.Y., Cai,S., Carnes,M., Carver,A.,
            Caulk,P.M., Center,A., Chen,Y.H., Cheng,M.L., Coyne,M.D.,
            Crowder,M., Danaher,S., Davenport,L.B., Desilets,R., Dietz,S.M.,
            Doup,L., Dullaghan,P., Ferriera,S., Fosler,C.R., Gire,H.C.,
            Gluecksmann,A., Gocayne,J.D., Gray,J., Hart,B., Haynes,J.,
            Hoover,J., Howland,T., Ibegwam,C., Jalali,M., Johns,D., Kline,L.,
            Ma,D.S., MacCawley,S., Magoon,A., Mann,F., May,D., McIntosh,T.C.,
            Mehta,S., Moy,L., Moy,M.C., Murphy,B.J., Murphy,S.D., Nelson,K.A.,
            Nuri,Z., Parker,K.A., Prudhomme,A.C., Puri,V.N., Qureshi,H.,
            Raley,J.C., Reardon,M.S., Regier,M.A., Rogers,Y.H., Romblad,D.L.,
            Schutz,J., Scott,J.L., Scott,R., Sitter,C.D., Smallwood,M.,
            Sprague,A.C., Stewart,E., Strong,R.V., Suh,E., Sylvester,K.,
            Thomas,R., Tint,N.N., Tsonis,C., Wang,G., Wang,G., Williams,M.S.,
            Williams,S.M., Windsor,S.M., Wolfe,K., Wu,M.M., Zaveri,J.,
            Chaturvedi,K., Gabrielian,A.E., Ke,Z., Sun,J., Subramanian,G.,
            Venter,J.C., Pfannkoch,C.M., Barnstead,M. and Stephenson,L.D.
  TITLE     A comparison of whole-genome shotgun-derived mouse chromosome 16
            and the human genome
  JOURNAL   Science 296 (5573), 1661-1671 (2002)
   PUBMED   12040188
  REMARK    Erratum:[Science 2002 Aug 23;297(5585):1278]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL662804.18, BF452544.1 and BY706354.1.
            
            On Dec 6, 2013 this sequence version replaced NM_001254724.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN00849384
                              [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            RefSeq Select criteria    :: based on conservation, expression,
                                         longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-40                AL662804.18        74025-74064         c
            41-502              BF452544.1         3-464
            503-574             AL662804.18        65784-65855         c
            575-672             AL662804.18        65602-65699         c
            673-951             BY706354.1         1-279
            952-952             AL662804.18        64906-64906         c
            953-1070            BY706354.1         281-398
            1071-1199           AL662804.18        64460-64588         c
FEATURES             Location/Qualifiers
     source          1..1199
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 66.75 cM"
     gene            1..1199
                     /gene="Efcab15"
                     /gene_synonym="1700023F06Rik"
                     /note="EF-hand calcium binding domain 15"
                     /db_xref="GeneID:69441"
                     /db_xref="MGI:MGI:1916691"
     exon            1..40
                     /gene="Efcab15"
                     /gene_synonym="1700023F06Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             34..1182
                     /gene="Efcab15"
                     /gene_synonym="1700023F06Rik"
                     /codon_start=1
                     /product="uncharacterized protein LOC69441"
                     /protein_id="NP_001241653.1"
                     /db_xref="CCDS:CCDS56814.1"
                     /db_xref="GeneID:69441"
                     /db_xref="MGI:MGI:1916691"
                     /translation="MEGSRGQKTKRSPSTLRRPPQKPRNILTRDAFKEQAGRVQKGRV
                     QPQIGQQSQSDLGAATTTKEEALLRMRDLKNPSEANQPYWSGPDDRSQSSADDSLLPL
                     TPRQLAAFQDIFKLFSCSPTGTVDMQSMKIALRNAGIQLGPQEMCEALRLADLDGDGI
                     VSFKDFLGVLTDNHRLAQCMGQMKGNRVGEPPGLQTLFLEVLFKLLSQGFVPPKSRQE
                     VTSYYFKKQQALRMSLCARNRARQGRPARAHTGLTFFCQAARLNGLSSSQLARSLHTL
                     CRAGGRSPYTQIPNLAGRPRPERKARVPGSDVRLPKPQQPGRPKLPPNLGPLSKGPLR
                     PPAGLTSQPLEQMRPSKLASSPPTLVQKHPSSPSPACFQRCAMKSLYK"
     exon            41..86
                     /gene="Efcab15"
                     /gene_synonym="1700023F06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            87..311
                     /gene="Efcab15"
                     /gene_synonym="1700023F06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            312..358
                     /gene="Efcab15"
                     /gene_synonym="1700023F06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            359..502
                     /gene="Efcab15"
                     /gene_synonym="1700023F06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            503..574
                     /gene="Efcab15"
                     /gene_synonym="1700023F06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            575..695
                     /gene="Efcab15"
                     /gene_synonym="1700023F06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            696..871
                     /gene="Efcab15"
                     /gene_synonym="1700023F06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            872..1024
                     /gene="Efcab15"
                     /gene_synonym="1700023F06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1025..1199
                     /gene="Efcab15"
                     /gene_synonym="1700023F06Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agaaaagcca gggccagagg aggcctgggg accatggagg gcagcagagg ccagaagacc
       61 aagagatccc catcgacact gagaaggcct ccacagaagc ctcggaatat cctcacacga
      121 gatgcattca aggagcaggc tggcagggtg caaaaggggc gggtgcagcc gcagataggc
      181 cagcagtccc agtcagatct aggagcagcc acaaccacta aagaggaggc cttactgagg
      241 atgagagatc tcaagaatcc ttctgaagct aaccagccat actggtcagg gccggatgac
      301 aggtctcaaa gctcggcgga tgatagcttg ctacccctga caccccggca gctggcagcc
      361 ttccaggata tcttcaaact gttcagttgc agcccaacag gcactgtgga catgcaaagc
      421 atgaaaattg ccctgcgcaa cgcgggtatc cagctgggcc cacaggagat gtgcgaggct
      481 cttcggctgg ctgacttaga tggtgatggg atcgtgagct tcaaggactt cctcggtgtc
      541 cttactgaca accaccgtct ggctcagtgc atgggccaaa tgaagggcaa tcgggtcggt
      601 gagcccccgg gcctgcagac cctgttcctc gaggtgctgt tcaaactact gagtcaaggc
      661 tttgtgcccc ccaaatcaag gcaggaggtg acaagctact atttcaagaa gcagcaggcc
      721 ctgcggatga gcttgtgcgc tcggaaccgg gcgcgccagg gccggcctgc gcgtgcgcac
      781 acgggcctca ccttcttctg ccaagctgcg cgcctcaatg gcctctccag ctctcagctg
      841 gcgcgctccc tgcacacact gtgcagagca ggtgggcgca gcccctacac tcagatcccc
      901 aacctcgccg ggcgcccaag gccagaacgc aaggctcgag ttccagggtc cgacgtccgc
      961 ctccccaagc cccaacagcc aggccgcccc aagctccctc ccaaccttgg gccactcagc
     1021 aaaggtcccc tccgccctcc cgccgggcta acgagccagc cgctggagca aatgcgcccc
     1081 tcgaagctgg cttcctcccc gccaactcta gtgcagaagc acccctcctc cccttcgcca
     1141 gcctgtttcc agagatgtgc tatgaagagc ttgtacaagt aaacagtttg ctgagcgaa
//
