LOCUS       NM_001110506            2350 bp    mRNA    linear   ROD 08-AUG-2023
DEFINITION  Mus musculus EF-hand calcium binding domain 12 (Efcab12),
            transcript variant 1, mRNA.
ACCESSION   NM_001110506
VERSION     NM_001110506.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2350)
  AUTHORS   Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, Magen
            A, Canidio E, Pagani M, Peluso I, Lin-Marq N, Koch M, Bilio M,
            Cantiello I, Verde R, De Masi C, Bianchi SA, Cicchini J, Perroud E,
            Mehmeti S, Dagand E, Schrinner S, Nurnberger A, Schmidt K, Metz K,
            Zwingmann C, Brieske N, Springer C, Hernandez AM, Herzog S, Grabbe
            F, Sieverding C, Fischer B, Schrader K, Brockmeyer M, Dettmer S,
            Helbig C, Alunni V, Battaini MA, Mura C, Henrichsen CN,
            Garcia-Lopez R, Echevarria D, Puelles E, Garcia-Calero E, Kruse S,
            Uhr M, Kauck C, Feng G, Milyaev N, Ong CK, Kumar L, Lam M, Semple
            CA, Gyenesei A, Mundlos S, Radelof U, Lehrach H, Sarmientos P,
            Reymond A, Davidson DR, Dolle P, Antonarakis SE, Yaspo ML, Martinez
            S, Baldock RA, Eichele G and Ballabio A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC109169.13.
            
            On Aug 26, 2022 this sequence version replaced NM_001110506.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7345562.1031813.1,
                                           SRR13422600.443911.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164138 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-433               AC109169.13        26686-27118
            434-888             AC109169.13        41191-41645
            889-1074            AC109169.13        42600-42785
            1075-1231           AC109169.13        44701-44857
            1232-1428           AC109169.13        47473-47669
            1429-1642           AC109169.13        48751-48964
            1643-1793           AC109169.13        50251-50401
            1794-1850           AC109169.13        52652-52708
            1851-2350           AC109169.13        53669-54168
FEATURES             Location/Qualifiers
     source          1..2350
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="6"
                     /map="6 53.72 cM"
     gene            1..2350
                     /gene="Efcab12"
                     /note="EF-hand calcium binding domain 12"
                     /db_xref="GeneID:212516"
                     /db_xref="MGI:MGI:2681834"
     exon            1..433
                     /gene="Efcab12"
                     /inference="alignment:Splign:2.1.0"
     CDS             85..2106
                     /gene="Efcab12"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="EF-hand calcium-binding domain-containing
                     protein 12 isoform 1"
                     /protein_id="NP_001103976.1"
                     /db_xref="CCDS:CCDS71816.1"
                     /db_xref="GeneID:212516"
                     /db_xref="MGI:MGI:2681834"
                     /translation="MRSILKKRPGEETVSCLPPNKCLAKVCNLRGGGYKQTRRVGCQK
                     THALRKPPPHPSNASQWDAGLSSHLSKAHSQNVAETLAKHSGKQKKSSRLWEAQKAEE
                     RKSRVTFGLTITDAGSHHSFTSIEDDLDETTSKVPVFKPELVTAHCFRQLKQKDFRLP
                     KSRRRIIIVPGTKDQVPARPTVPPEAPLPLMPSFRVLDTSDTQELPVDKKVWLNQRAK
                     LRRQLETFGDVKTWLDNKPNITSSEFRVLSMIRQEQKTPKHTLISIRRAKDRALRHVR
                     LIAPQLRLPKPPVLSDMYAYLRSRKIKILEIFSKGERGENQRISREEFLMALKAVGVP
                     LKNQELEDIIIYLGSLGKQNTITTEALASTYKQWSLAQQKSTIPSAKEYYKLSAKRTP
                     LKHSPKEQQATSSSQPRKMDLLKVPEVDTKMEGRPMSEEDMEDVGRRYRERRRQYKLS
                     LPSIQYMENCRLVRSGTKEFDNHCLPTTISGEMEELLNVTRRDNFLVYLQCWELCEAY
                     GLPLTEEILMRALLYPGDKIITLKEEVRPIRQPGGYYIDQRIVYSLAARRSPRRHGGK
                     KRDKKTSKKMKKMHFDDFEELTGKLKLQRLSPSDTHPNHFWPGHLLDKLRLYLPTVAK
                     DQSLAIFSCVEHKPPAYPAIYHSKNYWPMKDFSYMTHAYYDANKVYSIN"
     exon            434..888
                     /gene="Efcab12"
                     /inference="alignment:Splign:2.1.0"
     exon            889..1074
                     /gene="Efcab12"
                     /inference="alignment:Splign:2.1.0"
     exon            1075..1231
                     /gene="Efcab12"
                     /inference="alignment:Splign:2.1.0"
     exon            1232..1428
                     /gene="Efcab12"
                     /inference="alignment:Splign:2.1.0"
     exon            1429..1642
                     /gene="Efcab12"
                     /inference="alignment:Splign:2.1.0"
     exon            1643..1793
                     /gene="Efcab12"
                     /inference="alignment:Splign:2.1.0"
     exon            1794..1850
                     /gene="Efcab12"
                     /inference="alignment:Splign:2.1.0"
     exon            1851..2350
                     /gene="Efcab12"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agagaacccg gctgagtcac gtgacttgga atcaaagcca ggctcttgcg cctgggaacc
       61 tgcatttttc tcagttgggc aacaatgcgt tctatattga aaaagagacc tggagaggag
      121 acagtcagct gtctgccccc aaacaagtgc ttggcaaagg tttgcaattt gagaggtgga
      181 gggtacaaac aaacaagaag agttggatgc cagaagaccc atgctctccg aaaacctcct
      241 ccccacccat ctaatgcttc gcagtgggat gctggtctct ctagccacct ttccaaagca
      301 cacagtcaga atgtggcaga aaccctggcc aaacatagtg ggaagcaaaa gaaatcatcc
      361 aggttatggg aggcccagaa agccgaggag agaaaaagtc gtgtgacttt cggcttgacg
      421 atcacagacg ctgggtccca ccactctttc acctccatag aagatgacct cgatgaaacc
      481 accagcaagg ttcctgtctt caaacctgag ctagtcactg cccattgctt caggcagttg
      541 aagcagaaag acttccgcct gccaaagagc cgccggagga tcatcattgt gcctggcaca
      601 aaggaccaag tgccagcccg gcccacagtt ccgcctgaag ctcccctccc actcatgcct
      661 agcttcagag ttctggatac tagcgacacc caggagctac cagtggacaa gaaggtctgg
      721 ctgaatcaga gggcaaagct tcggaggcag ctggagacat tcggtgatgt caagacatgg
      781 ctggacaata agcccaacat cacatcatca gagttcaggg ttctgtccat gattcgccag
      841 gagcagaaaa ccccaaaaca taccttgatt tcaatcagga gagccaagga cagagctctc
      901 agacatgtcc gcctaattgc accacagctg cggctgccta agccccctgt cctgtctgac
      961 atgtacgcct accttcgtag tcgaaagatc aagatcctag agatatttag caagggggag
     1021 cggggcgaga accagcgcat ctccagggag gaatttctca tggctctgaa ggcggtagga
     1081 gttcctctga agaaccaaga gctggaggac atcatcatct acctcggctc tcttggcaag
     1141 cagaacacca tcaccacaga agccctggcc agtacctaca agcagtggtc actggcccag
     1201 cagaaaagca ccatacctag tgccaaggag tattacaaat tgtctgcaaa gagaactccc
     1261 ctgaagcaca gccctaaaga gcagcaagct acttcatcct cacagcctcg caagatggac
     1321 ctgctgaagg tgcctgaggt tgatacaaag atggaggggc ggcccatgtc agaggaagac
     1381 atggaggatg tgggcagacg gtaccgagag aggcggaggc agtacaagct ctctctcccc
     1441 tccattcaat acatggagaa ctgccgcctg gttcgatctg ggacgaaaga gtttgacaat
     1501 cactgcctgc cgactaccat ctctggggag atggaggagc tgctcaatgt gacccgcagg
     1561 gataacttcc tggtctacct gcagtgctgg gaactctgtg aggcctatgg gctcccgctg
     1621 actgaagaga tcctcatgag agcactgctg tatccaggag acaagatcat tactctgaaa
     1681 gaagaagtcc gcccaatccg gcagcctgga ggctattata tagaccagag gattgtctac
     1741 agcctggctg cacgcaggag cccccgcagg catgggggaa agaagagaga caagaagaca
     1801 tcaaagaaaa tgaagaaaat gcactttgac gatttcgagg aattaactgg gaagctgaag
     1861 ttgcagaggt taagcccctc agacacccat cccaatcact tctggcccgg tcaccttctg
     1921 gacaagctga ggctctacct gcctactgtg gccaaggacc agagcctggc gatcttcagc
     1981 tgtgtggaac acaagccccc tgcttaccct gccatttacc actctaagaa ctactggccc
     2041 atgaaagact tttcttatat gacccatgcc tattatgatg caaacaaggt gtactccatc
     2101 aactagagtg gattgcagga tgctggacca gaagacagtg cagccagaag cccccagctg
     2161 cagtcatgag atatcaacga gctatacgga aaaaaaaaaa caaaacattc ccagggaagg
     2221 tccggggatg tgtcccctga tgccacagtg gggtgtggat gtgtccacac acacatgctg
     2281 ctttcctatc tgtcatgacc tctgccgttt tgaaataaac taggttagag ctgaactaac
     2341 cttcactaaa
//
