LOCUS       NM_029152                693 bp    mRNA    linear   ROD 03-JUN-2024
DEFINITION  Mus musculus EF-hand calcium binding domain 10 (Efcab10), mRNA.
ACCESSION   NM_029152 XM_126856 XM_914009
VERSION     NM_029152.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 693)
  AUTHORS   Stauber,M., Weidemann,M., Dittrich-Breiholz,O., Lobschat,K.,
            Alten,L., Mai,M., Beckers,A., Kracht,M. and Gossler,A.
  TITLE     Identification of FOXJ1 effectors during ciliogenesis in the foetal
            respiratory epithelium and embryonic left-right organiser of the
            mouse
  JOURNAL   Dev Biol 423 (2), 170-188 (2017)
   PUBMED   27914912
REFERENCE   2  (bases 1 to 693)
  AUTHORS   McClintock,T.S., Glasser,C.E., Bose,S.C. and Bergman,D.A.
  TITLE     Tissue expression patterns identify mouse cilia genes
  JOURNAL   Physiol Genomics 32 (2), 198-206 (2008)
   PUBMED   17971504
  REMARK    GeneRIF: 4930504H06Rik is most abundantly expressed in tissues rich
            in highly ciliated cells, such as olfactory sensory neurons, and is
            predicted to be important to cilia.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC099564.1 and BF459438.1.
            
            On or before Jun 28, 2009 this sequence version replaced
            XM_914009.2, XM_126856.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC099564.1, AK015697.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849384
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-673               BC099564.1         1-673
            674-693             BF459438.1         1-20                c
FEATURES             Location/Qualifiers
     source          1..693
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="12"
                     /map="12 14.34 cM"
     gene            1..693
                     /gene="Efcab10"
                     /gene_synonym="4930504H06Rik"
                     /note="EF-hand calcium binding domain 10"
                     /db_xref="GeneID:75040"
                     /db_xref="MGI:MGI:1922290"
     exon            1..345
                     /gene="Efcab10"
                     /gene_synonym="4930504H06Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             237..635
                     /gene="Efcab10"
                     /gene_synonym="4930504H06Rik"
                     /codon_start=1
                     /product="EF-hand calcium-binding domain-containing
                     protein 10"
                     /protein_id="NP_083428.1"
                     /db_xref="CCDS:CCDS49048.1"
                     /db_xref="GeneID:75040"
                     /db_xref="MGI:MGI:1922290"
                     /translation="MEPVADRELQAKLYLERHRIMELLNQLTSFLLFARPKKPREYLI
                     SLLERLRVAKATHVAFPYFMDNSNTVSMFEMMDMAGRGCISFVQYKEALKNLGLCTAD
                     EVLNDDGHIITLDTFRDEMNKRMEKMWSMF"
     exon            346..510
                     /gene="Efcab10"
                     /gene_synonym="4930504H06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            511..598
                     /gene="Efcab10"
                     /gene_synonym="4930504H06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            599..675
                     /gene="Efcab10"
                     /gene_synonym="4930504H06Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      655..660
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Efcab10"
                     /gene_synonym="4930504H06Rik"
                     /note="hexamer: AATAAA"
     polyA_site      675
                     /gene="Efcab10"
                     /gene_synonym="4930504H06Rik"
                     /note="major polyA site"
ORIGIN      
        1 ggaccaaaca agctcagcct ctgtgttggc aactgcatca caagctggtg tcacagactg
       61 cccgccacac ccctgcttct tcctcagggg tgtggaaggg ggttgtcctg gtacctggga
      121 gggaagagga gtggggctgg ggaaggtgag gtgtttcacg tgaatgagca cgaaaggggc
      181 ggagttgggc cccctggagg ctgcctggtc gcctagcaac ggctcagcta ggaaacatgg
      241 agcctgtggc tgaccgggag cttcaggcca agctgtattt agaaagacat cggatcatgg
      301 aattgctgaa tcaacttact agcttcctcc tctttgcccg accaaaaaaa ccaagagagt
      361 atttaatctc tcttttggaa cgtctgagag ttgccaaggc aacacacgtg gcatttccct
      421 actttatgga caactctaac actgtgtcca tgtttgagat gatggacatg gccggcagag
      481 gctgcatatc atttgtgcag tataaagaag ccctaaaaaa cttgggtctg tgtactgcag
      541 atgaagtttt gaatgatgat ggacatataa tcactctgga tacattcagg gatgaaatga
      601 acaagaggat ggaaaaaatg tggtcaatgt tttagtggca ttgtagctca agataataaa
      661 tggtcctacc acgttaaaaa aaaaaaaaaa aaa
//
