LOCUS       XM_036152647            4999 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus early B cell factor 3 (Ebf3), transcript
            variant X9, mRNA.
ACCESSION   XM_036152647
VERSION     XM_036152647.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000073.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4999
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="7"
     gene            1..4999
                     /gene="Ebf3"
                     /gene_synonym="3110018A08Rik; mKIAA4201; O/E-2"
                     /note="early B cell factor 3; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 4
                     mRNAs, 12 ESTs, 414 long SRA reads, 2 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:13593"
                     /db_xref="MGI:MGI:894289"
     CDS             472..2334
                     /gene="Ebf3"
                     /gene_synonym="3110018A08Rik; mKIAA4201; O/E-2"
                     /codon_start=1
                     /product="transcription factor COE3 isoform X3"
                     /protein_id="XP_036008540.1"
                     /db_xref="GeneID:13593"
                     /db_xref="MGI:MGI:894289"
                     /translation="MFGIQENIPRGGTTMKEEPLGSGMNPVRSWMHTAGVVDANTAAQ
                     SGVGLARAHFEKQPPSNLRKSNFFHFVLALYDRQGQPVEIERTAFVDFVEKEKEPNNE
                     KTNNGIHYKLQLLYSNGVRTEQDLYVRLIDSMTKQAIVYEGQDKNPEMCRVLLTHEIM
                     CSRCCDKKSCGNRNETPSDPVIIDRFFLKFFLKCNQNCLKNAGNPRDMRRFQVVVSTT
                     VNVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEATPCIKAISPSEGWTTGGATVIIIG
                     DNFFDGLQVVFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRF
                     VYTALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEALYGMPHNNQEII
                     LKRAADIAEALYSVPRNHNQIPTLGNTPAHTGMMGVNSFSSQLAVNVSETSQANDQVG
                     YSRNTSSVSPRGYVPSSTPQQSNYNTVSTSMNGYGSGAMANLGVPGSPGFLNGSSANS
                     PYGIVPSSPTMAASSVTLPSNCSSTHGIFSFSPANVISAVKQKSAFAPVVRPQASPPP
                     SCTSANGNGLQGSLLGAEDATVEKTNWPFCEVGGIFHFDELMLKKGTGKLCLGW"
ORIGIN      
        1 gcagcacacc tccagcccgc cgcaggcgac gctggcacct cgcggccccg gcgcccgcca
       61 cgcccgtcgg agtagaggct cggcggctca ggcgggccgc gccagaagcg ggcgatcccg
      121 cagtgtcctg cagccgcgga cgccgcctgg ctaggatgac accacgttga gcgcgcctgc
      181 aaacaacaac aacaacaagc gccgccgcgg ccaccgcgtc caccgcgccc tgctcctccg
      241 aagcgtcgcg tcgccaccgg tgcagcccgc ccgcgtcccc ggccgtccgc agcgcccggc
      301 cgccggtgta tgcggcgcct gcccgggacg ggctgaagcc ggcggcgggc cgcaccgcag
      361 gcgccgagca gggccagggc ggccagggca gcctcctgcc gccgagcccc gagcgccgcc
      421 gaccgcggac gcgctttcgg ccgggagtcg cggccgccgc cagcagtgtt catgtttggg
      481 attcaggaga atattccgcg cggggggacg accatgaagg aggagccgct gggcagcggc
      541 atgaacccgg tgcgctcgtg gatgcacacg gcaggcgtgg tggacgccaa cacggccgcc
      601 cagagcggcg tggggctggc gcgggcgcac ttcgagaagc agcctccttc caacctccgg
      661 aaatccaatt tcttccactt cgtgctggcg ctctacgaca ggcaggggca gccggtggag
      721 atcgaaagga ccgcttttgt ggactttgtg gagaaagaga aagagccgaa caacgagaaa
      781 accaacaacg gcattcacta caagctgcag ctactgtaca gcaatggcgt cagaacagag
      841 caagatctgt atgtccgcct catagattca atgaccaaac aggccatcgt gtatgaaggc
      901 caggacaaga atccggagat gtgccgcgtg ctgctgaccc acgagatcat gtgcagccgg
      961 tgctgtgaca agaagagttg tggcaataga aacgagacac cctcagaccc tgtaatcatt
     1021 gacagattct ttctaaagtt cttcctcaag tgcaatcaga actgcctgaa gaatgcgggc
     1081 aaccctcggg acatgcggag gttccaggtc gttgtatcga caacagtcaa cgtggacggc
     1141 cacgtgctgg ccgtgtctga caacatgttt gtgcacaaca attccaaaca cgggaggcgg
     1201 gcccgccgcc tagacccgtc agaagccact ccgtgtatca aggctatcag ccccagtgaa
     1261 ggctggacca cggggggtgc cactgtgatc ataatcgggg acaacttctt tgacggtcta
     1321 caagttgtgt tcggaactat gttggtgtgg agtgagctga taacccccca cgccatccga
     1381 gtgcagacgc cgcctcgaca catccctgga gttgttgaag tgaccctctc ctacaagtct
     1441 aagcagttct gcaaaggcgc tcctggacgc tttgtctaca ctgcccttaa tgagccaacc
     1501 atagattacg gcttccagag gttgcagaaa gtgataccca gacatccagg tgaccccgaa
     1561 aggttaccca aggaagtgtt actgaagagg gcagcagacc ttgtggaagc cttgtatggg
     1621 atgcctcaca ataaccagga gatcatcctg aagagagcgg ccgacattgc tgaggcgttg
     1681 tacagcgttc cccgcaatca caaccagatc cccaccctgg gcaacacccc agcacacact
     1741 ggcatgatgg gtgtgaactc cttcagcagc cagctagccg ttaatgtgtc agagacctca
     1801 caagccaatg accaagtcgg ctacagtcgc aatacaagca gcgtgtcccc gcgaggctac
     1861 gtccccagca gtactcccca gcagtccaat tacaacacag tcagcactag catgaatgga
     1921 tatggaagtg gcgccatggc caatctaggg gtccctggct cgcctggatt tcttaatggc
     1981 tcctccgcta actctcccta cggcatagtg ccgtccagcc ccaccatggc agcctcttcg
     2041 gtcaccctcc cttcaaactg tagcagcaca cacggcattt tctcattctc acctgccaat
     2101 gtcatctccg cagtgaaaca gaagagcgct tttgcgcccg tggtccggcc ccaagcctcg
     2161 cctcctcctt cctgcaccag cgccaacggg aacggactgc aaggctctct gctgggtgcc
     2221 gaggacgcaa ccgtggagaa gacaaactgg cccttttgtg aagtcggtgg tatattccac
     2281 tttgatgaac taatgctcaa aaaaggaact ggaaagctat gtctgggctg gtagtcccgc
     2341 ccatgtgagg ggctctgttt gccttcgcag cacccagcat ccaaggacgg acttcagggg
     2401 acacgtgtag tgtgttaaga tgtgctgatg gaaacactat cttcaaaact aaaaatcagc
     2461 cacagttgaa tgctacaaaa gacatttaaa gattttattt aaactgttaa gaatcaagcc
     2521 gcgaacaagc ccactccttc atgaacaatt ccactttatt gactgaactc ttctcatacc
     2581 ttcacatttc tcagtcctga agattaagga aacaaagcac cgcctatttt gtataaagtt
     2641 tctgattccg tcttggctgt ctagtgcgtg ctatctgtgt ggggagaagc ttcgtgaata
     2701 tgcaccgttt tgatgcccat gcaacagtga ggaagaaaaa ccctcgagac attttttctg
     2761 tactcatatt tagattcaca atggttgtgt atctctataa tgtgaaatat ttttttgtgg
     2821 tgaataaaag ggggccaagg aggtatgagc cattaactgg aacagacgag gatatgacta
     2881 ggtgaatttg gggtggcagg gagggaggga gggtttatca ttgcttaact tcatcttaat
     2941 gaaatgaaac tttgtaactt attgtagtta gaaattgtaa ctttgatatc gaatctcttg
     3001 ccttcaacaa gcacactgac agagaaaaaa aaatatgcta ctgtctgttg gttccaatat
     3061 tctcccacct agagcttcct gttaaagcaa gtgcgatcag caacattttt caactttcgc
     3121 gcactgtaaa cctattgcat tcttaggcta ctgtgaggtc tatgtttctt gtacctgaaa
     3181 ttgtcctttg gactcctaga cccttcttcc ccgatgtgtt ttgtatgtgg ttataaaatt
     3241 gtagactttt gtgattttgc caaagttgta gctaaatatt tatacacttg tcttgaattt
     3301 ttttcagatc cacttaaaat atttagaaaa acgagtttta ttccttatgg gtcttatagg
     3361 ggataaaatg ctcttcttcc atgcgacact tcctttccca tgaacacttg cagttgctaa
     3421 gggactttat tttgtaacat attaattata aatattgtat ttatctttga aattttgtac
     3481 attgctttcc ctgccttctt ttttcacgtc tgttttggtg tttgatccct gcccagtgtt
     3541 gtcgcacagg ggaagggcag ataccaagac ctgtctgttg gatctgtttt gttgagataa
     3601 actgatgtcc ttacatttca tttgtaccta aaccatttgc tatcgtttag actttccacc
     3661 ccccacccct tttttttatg ttgaggaaaa gtcaaattca ttgtttattt ttatattatt
     3721 tttaagttat ctgaacaaat acttttgaaa agaaaagttt gttgtatagt caaaagaaaa
     3781 cggtgtcagc ggccgagaca aattctggta ggttctgtgc atgtgaagcg gccgtgaagg
     3841 ggccacatcg tccgggctgt gtccttattt aatttttaat ttttaatttt ttcgtagaat
     3901 gtaaaaaaaa aaaagtcatt ttagctgcca cctatgactt tgccacatag ctgaactgtg
     3961 tttactggaa aaattcagag gcctaaagtt taaaataaaa tttacttccg acgttttaat
     4021 tacaaatgtt tgccacatta acttctctga tgccttaaaa gtggacttct ttgaagaact
     4081 tctgtgctat tttatcacag gctcatacca caattgttaa tatctggaga tggatgatga
     4141 acacacacac acacacacac acacacacac acacacacac accaaaagca caaacctcca
     4201 gtccgccagt cacttcttcc tgggtctgtc tgctgctctc ggtcctctaa gctccccttg
     4261 gagttggaga ggtatcgggg acactgctgg ttagtacgtt ttgattttaa acaggacctt
     4321 tgtgtggtca gatcccacag cactgcctgt cctttttttt ttaactggaa agacctcctt
     4381 cagacactct gcctcttagt gccaaaccca ccgtcagacc aagagtcagg acttcaggac
     4441 tctgtccttc cttcccactc atcgcccttg cagacagcgt gtgctttgcg aacagcagca
     4501 gaagtcacat ttagaacaaa aaggagggga ttataaaaaa actagacaca caccttcaca
     4561 aagagacaac atagagctta gaaagcgttc attcaaggga ctcagtaaga gaaacggaat
     4621 gtccccaagg gtcagtgggc cacactctgg ctttgtggct gctgacaggg cttagctaca
     4681 cgaacagcct gagaagtcac tttggaacta aattgcctcg atttattttg tgtaagtaag
     4741 ggtttgacct aaaaagagct cacgtgcaca ttagcaagtg tcctcatgcc cgcacccggt
     4801 ttgtgttgta gatcaactag ccaacgccct cattgcttca ttgtgtcaaa aaaccgagag
     4861 cttcactaaa tggtagattt tgctgtcaga gaccctacaa taagattgtt ttatctgtac
     4921 attttttcag atatttaact gtataaaatg ttcattttac acaatattta attaaagtat
     4981 ttcttgtctg tgaatttca
//
