LOCUS       XM_036152643            5031 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus early B cell factor 3 (Ebf3), transcript
            variant X2, mRNA.
ACCESSION   XM_036152643
VERSION     XM_036152643.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000073.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5031
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="7"
     gene            1..5031
                     /gene="Ebf3"
                     /gene_synonym="3110018A08Rik; mKIAA4201; O/E-2"
                     /note="early B cell factor 3; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 4
                     mRNAs, 15 ESTs, 391 long SRA reads, 5 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:13593"
                     /db_xref="MGI:MGI:894289"
     CDS             477..2366
                     /gene="Ebf3"
                     /gene_synonym="3110018A08Rik; mKIAA4201; O/E-2"
                     /codon_start=1
                     /product="transcription factor COE3 isoform X1"
                     /protein_id="XP_036008536.1"
                     /db_xref="GeneID:13593"
                     /db_xref="MGI:MGI:894289"
                     /translation="MFGIQENIPRGGTTMKEEPLGSGMNPVRSWMHTAGVVDANTAAQ
                     SGVGLARAHFEKQPPSNLRKSNFFHFVLALYDRQGQPVEIERTAFVDFVEKEKEPNNE
                     KTNNGIHYKLQLLYSNGVRTEQDLYVRLIDSMTKQAIVYEGQDKNPEMCRVLLTHEIM
                     CSRCCDKKSCGNRNETPSDPVIIDRFFLKFFLKCNQNCLKNAGNPRDMRRFQVVVSTT
                     VNVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEGTAPSYLENATPCIKAISPSEGWTT
                     GGATVIIIGDNFFDGLQVVFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQ
                     FCKGAPGRFVYTALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEALYG
                     MPHNNQEIILKRAADIAEALYSVPRNHNQIPTLGNTPAHTGMMGVNSFSSQLAVNVSE
                     TSQANDQVGYSRNTSSVSPRGYVPSSTPQQSNYNTVSTSMNGYGSGAMANLGVPGSPG
                     FLNGSSANSPYGIVPSSPTMAASSVTLPSNCSSTHGIFSFSPANVISAVKQKSAFAPV
                     VRPQASPPPSCTSANGNGLQGSLLGAEDATVEKTNWPFCEVGGIFHFDELMLKKGTGK
                     LCLGW"
ORIGIN      
        1 gcggagcagc acacctccag cccgccgcag gcgacgctgg cacctcgcgg ccccggcgcc
       61 cgccacgccc gtcggagtag aggctcggcg gctcaggcgg gccgcgccag aagcgggcga
      121 tcccgcagtg tcctgcagcc gcggacgccg cctggctagg atgacaccac gttgagcgcg
      181 cctgcaaaca acaacaacaa caagcgccgc cgcggccacc gcgtccaccg cgccctgctc
      241 ctccgaagcg tcgcgtcgcc accggtgcag cccgcccgcg tccccggccg tccgcagcgc
      301 ccggccgccg gtgtatgcgg cgcctgcccg ggacgggctg aagccggcgg cgggccgcac
      361 cgcaggcgcc gagcagggcc agggcggcca gggcagcctc ctgccgccga gccccgagcg
      421 ccgccgaccg cggacgcgct ttcggccggg agtcgcggcc gccgccagca gtgttcatgt
      481 ttgggattca ggagaatatt ccgcgcgggg ggacgaccat gaaggaggag ccgctgggca
      541 gcggcatgaa cccggtgcgc tcgtggatgc acacggcagg cgtggtggac gccaacacgg
      601 ccgcccagag cggcgtgggg ctggcgcggg cgcacttcga gaagcagcct ccttccaacc
      661 tccggaaatc caatttcttc cacttcgtgc tggcgctcta cgacaggcag gggcagccgg
      721 tggagatcga aaggaccgct tttgtggact ttgtggagaa agagaaagag ccgaacaacg
      781 agaaaaccaa caacggcatt cactacaagc tgcagctact gtacagcaat ggcgtcagaa
      841 cagagcaaga tctgtatgtc cgcctcatag attcaatgac caaacaggcc atcgtgtatg
      901 aaggccagga caagaatccg gagatgtgcc gcgtgctgct gacccacgag atcatgtgca
      961 gccggtgctg tgacaagaag agttgtggca atagaaacga gacaccctca gaccctgtaa
     1021 tcattgacag attctttcta aagttcttcc tcaagtgcaa tcagaactgc ctgaagaatg
     1081 cgggcaaccc tcgggacatg cggaggttcc aggtcgttgt atcgacaaca gtcaacgtgg
     1141 acggccacgt gctggccgtg tctgacaaca tgtttgtgca caacaattcc aaacacggga
     1201 ggcgggcccg ccgcctagac ccgtcagaag gtacggcccc ttcttatctg gaaaatgcca
     1261 ctccgtgtat caaggctatc agccccagtg aaggctggac cacggggggt gccactgtga
     1321 tcataatcgg ggacaacttc tttgacggtc tacaagttgt gttcggaact atgttggtgt
     1381 ggagtgagct gataaccccc cacgccatcc gagtgcagac gccgcctcga cacatccctg
     1441 gagttgttga agtgaccctc tcctacaagt ctaagcagtt ctgcaaaggc gctcctggac
     1501 gctttgtcta cactgccctt aatgagccaa ccatagatta cggcttccag aggttgcaga
     1561 aagtgatacc cagacatcca ggtgaccccg aaaggttacc caaggaagtg ttactgaaga
     1621 gggcagcaga ccttgtggaa gccttgtatg ggatgcctca caataaccag gagatcatcc
     1681 tgaagagagc ggccgacatt gctgaggcgt tgtacagcgt tccccgcaat cacaaccaga
     1741 tccccaccct gggcaacacc ccagcacaca ctggcatgat gggtgtgaac tccttcagca
     1801 gccagctagc cgttaatgtg tcagagacct cacaagccaa tgaccaagtc ggctacagtc
     1861 gcaatacaag cagcgtgtcc ccgcgaggct acgtccccag cagtactccc cagcagtcca
     1921 attacaacac agtcagcact agcatgaatg gatatggaag tggcgccatg gccaatctag
     1981 gggtccctgg ctcgcctgga tttcttaatg gctcctccgc taactctccc tacggcatag
     2041 tgccgtccag ccccaccatg gcagcctctt cggtcaccct cccttcaaac tgtagcagca
     2101 cacacggcat tttctcattc tcacctgcca atgtcatctc cgcagtgaaa cagaagagcg
     2161 cttttgcgcc cgtggtccgg ccccaagcct cgcctcctcc ttcctgcacc agcgccaacg
     2221 ggaacggact gcaaggctct ctgctgggtg ccgaggacgc aaccgtggag aagacaaact
     2281 ggcccttttg tgaagtcggt ggtatattcc actttgatga actaatgctc aaaaaaggaa
     2341 ctggaaagct atgtctgggc tggtagtccc gcccatgtga ggggctctgt ttgccttcgc
     2401 agcacccagc atccaaggac ggacttcagg ggacacgtgt agtgtgttaa gatgtgctga
     2461 tggaaacact atcttcaaaa ctaaaaatca gccacagttg aatgctacaa aagacattta
     2521 aagattttat ttaaactgtt aagaatcaag ccgcgaacaa gcccactcct tcatgaacaa
     2581 ttccacttta ttgactgaac tcttctcata ccttcacatt tctcagtcct gaagattaag
     2641 gaaacaaagc accgcctatt ttgtataaag tttctgattc cgtcttggct gtctagtgcg
     2701 tgctatctgt gtggggagaa gcttcgtgaa tatgcaccgt tttgatgccc atgcaacagt
     2761 gaggaagaaa aaccctcgag acattttttc tgtactcata tttagattca caatggttgt
     2821 gtatctctat aatgtgaaat atttttttgt ggtgaataaa agggggccaa ggaggtatga
     2881 gccattaact ggaacagacg aggatatgac taggtgaatt tggggtggca gggagggagg
     2941 gagggtttat cattgcttaa cttcatctta atgaaatgaa actttgtaac ttattgtagt
     3001 tagaaattgt aactttgata tcgaatctct tgccttcaac aagcacactg acagagaaaa
     3061 aaaaatatgc tactgtctgt tggttccaat attctcccac ctagagcttc ctgttaaagc
     3121 aagtgcgatc agcaacattt ttcaactttc gcgcactgta aacctattgc attcttaggc
     3181 tactgtgagg tctatgtttc ttgtacctga aattgtcctt tggactccta gacccttctt
     3241 ccccgatgtg ttttgtatgt ggttataaaa ttgtagactt ttgtgatttt gccaaagttg
     3301 tagctaaata tttatacact tgtcttgaat ttttttcaga tccacttaaa atatttagaa
     3361 aaacgagttt tattccttat gggtcttata ggggataaaa tgctcttctt ccatgcgaca
     3421 cttcctttcc catgaacact tgcagttgct aagggacttt attttgtaac atattaatta
     3481 taaatattgt atttatcttt gaaattttgt acattgcttt ccctgccttc ttttttcacg
     3541 tctgttttgg tgtttgatcc ctgcccagtg ttgtcgcaca ggggaagggc agataccaag
     3601 acctgtctgt tggatctgtt ttgttgagat aaactgatgt ccttacattt catttgtacc
     3661 taaaccattt gctatcgttt agactttcca ccccccaccc ctttttttta tgttgaggaa
     3721 aagtcaaatt cattgtttat ttttatatta tttttaagtt atctgaacaa atacttttga
     3781 aaagaaaagt ttgttgtata gtcaaaagaa aacggtgtca gcggccgaga caaattctgg
     3841 taggttctgt gcatgtgaag cggccgtgaa ggggccacat cgtccgggct gtgtccttat
     3901 ttaattttta atttttaatt ttttcgtaga atgtaaaaaa aaaaaagtca ttttagctgc
     3961 cacctatgac tttgccacat agctgaactg tgtttactgg aaaaattcag aggcctaaag
     4021 tttaaaataa aatttacttc cgacgtttta attacaaatg tttgccacat taacttctct
     4081 gatgccttaa aagtggactt ctttgaagaa cttctgtgct attttatcac aggctcatac
     4141 cacaattgtt aatatctgga gatggatgat gaacacacac acacacacac acacacacac
     4201 acacacacac acaccaaaag cacaaacctc cagtccgcca gtcacttctt cctgggtctg
     4261 tctgctgctc tcggtcctct aagctcccct tggagttgga gaggtatcgg ggacactgct
     4321 ggttagtacg ttttgatttt aaacaggacc tttgtgtggt cagatcccac agcactgcct
     4381 gtcctttttt ttttaactgg aaagacctcc ttcagacact ctgcctctta gtgccaaacc
     4441 caccgtcaga ccaagagtca ggacttcagg actctgtcct tccttcccac tcatcgccct
     4501 tgcagacagc gtgtgctttg cgaacagcag cagaagtcac atttagaaca aaaaggaggg
     4561 gattataaaa aaactagaca cacaccttca caaagagaca acatagagct tagaaagcgt
     4621 tcattcaagg gactcagtaa gagaaacgga atgtccccaa gggtcagtgg gccacactct
     4681 ggctttgtgg ctgctgacag ggcttagcta cacgaacagc ctgagaagtc actttggaac
     4741 taaattgcct cgatttattt tgtgtaagta agggtttgac ctaaaaagag ctcacgtgca
     4801 cattagcaag tgtcctcatg cccgcacccg gtttgtgttg tagatcaact agccaacgcc
     4861 ctcattgctt cattgtgtca aaaaaccgag agcttcacta aatggtagat tttgctgtca
     4921 gagaccctac aataagattg ttttatctgt acattttttc agatatttaa ctgtataaaa
     4981 tgttcatttt acacaatatt taattaaagt atttcttgtc tgtgaatttc a
//
