LOCUS       NM_177856               1568 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus RIKEN cDNA E130311K13 gene (E130311K13Rik), transcript
            variant 1, mRNA.
ACCESSION   NM_177856
VERSION     NM_177856.6
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1568)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC116732.10.
            
            On Jan 14, 2022 this sequence version replaced NM_177856.5.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK087526.1, BC125500.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-142               AC116732.10        148299-148440       c
            143-202             AC116732.10        146306-146365       c
            203-350             AC116732.10        144376-144523       c
            351-511             AC116732.10        139243-139403       c
            512-1568            AC116732.10        133724-134780       c
FEATURES             Location/Qualifiers
     source          1..1568
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="3"
                     /map="3 30.08 cM"
     gene            1..1568
                     /gene="E130311K13Rik"
                     /note="RIKEN cDNA E130311K13 gene"
                     /db_xref="GeneID:329659"
                     /db_xref="MGI:MGI:3607716"
     exon            1..142
                     /gene="E130311K13Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             29..913
                     /gene="E130311K13Rik"
                     /note="isoform 1 is encoded by transcript variant 1;
                     protein C3orf33 homolog"
                     /codon_start=1
                     /product="protein C3orf33 homolog isoform 1"
                     /protein_id="NP_808524.1"
                     /db_xref="CCDS:CCDS38445.1"
                     /db_xref="GeneID:329659"
                     /db_xref="MGI:MGI:3607716"
                     /translation="MARPPASLGSQAPDRDRGEANVVTRVSQWADNHLRLVQNISTGM
                     AIAGIMLLIRSVRLTSKFTTSSDIPVEFIRKKVKLRGRLQRITECGLEIEHIPITLPF
                     ISSWKEEPRGVLLVKLAGVELTESGKVWLQAELKPSQLLWFQLLGKEDSALFCYLLVN
                     KGGYFNVNLNEEILRRGLGKTVLVKGLNYDSKTHWKIHRNLLKAELTALKKGEGIWKE
                     ESEKESYFRKLKDSWRERWTKDNDLKPAGADLGSTKDSYHDSRRRASGKGKDSVSNYS
                     FFLKLREFVSRLHFWRKG"
     exon            143..202
                     /gene="E130311K13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            203..350
                     /gene="E130311K13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            351..511
                     /gene="E130311K13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            512..1568
                     /gene="E130311K13Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1547..1552
                     /regulatory_class="polyA_signal_sequence"
                     /gene="E130311K13Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1568
                     /gene="E130311K13Rik"
                     /note="major polyA site"
ORIGIN      
        1 gcccgcaagg cttgctggac gccggaacat ggcgcggccg cccgcgagcc tcgggtcgca
       61 ggcgccggac cgcgaccgag gggaggccaa cgtggtgaca cgggtgtcgc aatgggcaga
      121 caaccatctg cgccttgtcc agaacatcag cacgggaatg gccatagctg ggataatgtt
      181 gctgataagg agcgtccggc tgacctcaaa atttacaacc tcttcagata ttccagtaga
      241 atttataaga aagaaagtta aactacgtgg ccgattacag cggataactg agtgtggtct
      301 agaaattgaa catataccta ttactttacc tttcatatct tcatggaaag aagaaccacg
      361 tggagttttg ctggttaaac tggctggagt agaactcact gaaagtggta aggtgtggct
      421 acaggcagag ctgaagcctt cccagctgct ctggttccag ctcctcggaa aggaggactc
      481 agcactcttt tgctacctac tagtgaacaa gggcggatat tttaacgtga atctgaatga
      541 ggagattttg agaagaggct tgggcaaaac cgtccttgtt aaagggctaa attatgactc
      601 aaaaacccac tggaaaattc acagaaactt acttaaagct gaattgacgg ccttaaagaa
      661 aggagaagga atatggaagg aagagtctga aaaagaaagc tattttagaa aattgaaaga
      721 ctcctggaga gagagatgga caaaggacaa tgatttaaaa ccagctggag cagacctcgg
      781 ctccaccaaa gacagttatc acgacagccg gcgcagggcg tccgggaagg ggaaggacag
      841 cgtgagcaac tactctttct ttctgaaact cagagaattt gtgagccgct tacacttttg
      901 gaggaaagga tgaagcgttg tgaggtctgg aggtaaccct agaagaacgc catggaactg
      961 tgtgagcact tttcattgag gcaaaatgga aattccctca ggggatcaaa atcccagtct
     1021 tgcagtattt gtacattaaa accattgtta aggccgggcg tggtagcgca cacctttagt
     1081 cccagcactt gggaggcgga ggcaggcaga tttctgagtt cgaggccagc ctggtctaca
     1141 gggtgagttc caggacagcc agggctatgc agagaaacgc tgtctctaaa aaacaaaaaa
     1201 caaaacaaaa caaaaaaaca ttgttaaaat cagaatcaat ttgaataagt tatgatcaat
     1261 gtaatatact tttagaaagt agtgacacac tgtaaaaagt tacccagtag aaagatgtat
     1321 atatgcagaa ctaatgtttt gccttgttct tctgcctccc tgtaccctag tgccagggat
     1381 tgaactcagg gcctcaggta ctctggtcta gcagcacatc attactgagc tacattacca
     1441 gccctatagt gctaatgtct gaagaggaag tttaagtatc gactgttata ttagttgtct
     1501 aggacagcca tatttgacat ttgtttttca gttttatcaa ctttataata aaggaattta
     1561 aaaaaaca
//
