LOCUS       XM_006506167            6908 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus dysferlin (Dysf), transcript variant X5,
            mRNA.
ACCESSION   XM_006506167
VERSION     XM_006506167.3
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000072.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_006506167.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6908
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="6"
     gene            1..6908
                     /gene="Dysf"
                     /gene_synonym="2310004N10Rik; D6Pas3"
                     /note="dysferlin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 2 mRNAs, 34 ESTs, 43 long
                     SRA reads, 6 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 5 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:26903"
                     /db_xref="MGI:MGI:1349385"
     CDS             260..6679
                     /gene="Dysf"
                     /gene_synonym="2310004N10Rik; D6Pas3"
                     /codon_start=1
                     /product="dysferlin isoform X5"
                     /protein_id="XP_006506230.1"
                     /db_xref="GeneID:26903"
                     /db_xref="MGI:MGI:1349385"
                     /translation="MLCCLLARASNLPNVKKDRRSDPVASLIFRGVKKRTKVIKNSVN
                     PVWNEGFEWDLKGIPLDQSSELLVVVKDHETMGRNRFLGEAKIPLQEVLATPSLSASF
                     NAPLLDAKQQPTGASLVLQVSYTPPPGAVPLFPPPASLAPSPTLPDMDLVPGGGQSRA
                     ETWSLLSDSTMDTRYSGKKWPVPTDTGGEEDTEDQGLTGDEAEPFLDQSAAVGPGGPT
                     TPRKPPSHPPPHYPGAKRKRSSAPPRKLLSDKPQDFQIRVQVIEGRQLPGVNIKPVVK
                     VTAAGQTKRTRIQKGNSPLFNETLFFNVFDSPLELFDEPIFITVVDSRSLRTDALLGE
                     FRMDVGTVYREPRHAYLRKWLLLSDPDDFSAGARGYLKASLCVLGPGDEAPLDKKDPS
                     EDKEDIEGNLLRPTGVALRGAHFCLKLFRAEDLPQMDDAVMDNVKQIFGFDSNKKNLV
                     DPFVEVSFAGKMLCSKILEKTANPQWNQNITLPAMFPSMCEKMRIRVMDWDRLTHNDT
                     VATTYLGMSKISATGGEIEEEPAGVLKSPQATDLDDNLGFLPTFGPCYVNLYGSPREF
                     TGFPDPYAELNTGKGEGVAYRGRVLLSLETKLVEHSEQKVEDLPADDILRVEKYLRRR
                     KYSLFAAFYSATMLQDVDDAIQFEVSIGNYGNKFDTTCLPLASTTQYSRAVFDGCHYY
                     YLPWGNVKPVVVLSSYWEDISHRIEIQNQLLRVADRLEANLEQVHLALKAQCSSEDVD
                     ALVAQLTDELLADCSQPLCDIHEIPSATHLDQYLLRLRTRHLSQIKEAALALKLGHSE
                     LSTALEQAEDWLLHLRALAEEPQNSLPDIIIWMLQGDKRVAYQRVPAHEVLFSRRGPS
                     YCGRNCGKLQTIFLKYPMEGMPGARMPVQIRIKLWFGLSVDEKEFNQFAEGKLSVFAE
                     TYENQTKLALVGNWGTTGLTYPKFSDVTGKIKLPKDSFRPSAGWAWAGDWFVCPEKTL
                     LHDADAGHLSFVEEVFENQTRLPGGQWIYMSDNYTDVNGEKVLPKDDIECPLGWKWED
                     EEWSTDLNRAVDEQGWEYSITIPPDRKPKHWVPVEKMYYTHRRRRWVRLRRRDLSQME
                     ALKRHRQAEAEGEGWEYASLFGWKFHLEYRKTDAFRRRRWRRRMEPLEKTGPAAVFAL
                     EGALGGMVDDKSEDSMSVSTLSFGVNRPTISCIFDYGNRYHLRCYLYQARDLPAMDKD
                     SFSDPYAIVSFLHQSQKTVVEKNTLNPTWDQTLIFYEIEIFGEPASIAEHPPCIVVEL
                     YDHDTYGADEFMGRCICQPSLERMPRLAWFPLTRGSQPAGELLAAFELIQREKPAIHH
                     IPGFEMHETSRILDETEDTDLPYPPPQREANIYMVPQNIKPALQRTAIEILAWGLRNM
                     KSYQMASISSPSLVVECGGQTVQSCVIRNLRKNPNFDVCTLFMEVMLPREDLYCPPIV
                     VKVIDNRQFGRRPVVGQCTIRSLENFLCDPYSAESPSPQGGPDDVSLLSPGEDVLIDI
                     DDKEPLIPVQLTDGLSSLGPTNLTPSPSSPHKILLEEEFIDWWSKFFASVGEREKCGS
                     YLEKDFDTLKVYDTQLENVEAFGGLSDFCNTFKLYRGRTQEETDDPSVIGEFKGLFKI
                     YPLPEDPAIPMPPRQFHQLAAQGPQECLVRIYIVRAFGLQPKDPNGKCDPYIKISIGK
                     KSVSDQDNYIPCTLEPVFGKMFELTCTLPLEKDLKITLYDYDLLSKDEKIGETVIDLE
                     NRLLSKFGARCGLPQTYCVSGPNQWRDQLRPSQLLHLFCQQHRIKAPVYRTDRVTFQD
                     KDYTIEEIEAGRLPNPHLGPVEERLALHVLQQQGLVPEHVESRPLYSPLQPDIEQGKL
                     QMWIDIFPKVLGRPGPPFNITPRKARRFFLRCIIWNTKDVILDDLSLTGEKMSDIYVK
                     GWMVGFEEHKQKTDVHYRSLGGEGNFNWRFVFPFDYLPAEQVCAVAKKDAFWRLDKTE
                     SKIPARVVFQIWDNDKFSFDDFLGSLQLDLNRMPKPAKTAEKCSLDQLDDTFHPEWFV
                     SLFEQKTVKGWWPCVTEEGEKKMLAGKLEMTLEIVAESEHEERPAGQGRDEPNMNPKL
                     EDPRRPDTSFLWFTSPYKTMKFILWRRFRCAIILFIILFILLLFLGVFVYAFPNYAAM
                     KLVKPFR"
ORIGIN      
        1 cagagtaatt ccttgctcct ccttggccac cgccctgagg gcggacccag gccgggatgg
       61 aaggaaggat ccgccccctg ggtgtacctt atcccacgcg cagcctcgca ttctaagctg
      121 accaagtctc cgcggaggcg cagcagaatc aactgctctc ttggcatagc catcctggat
      181 ctgaactctg gcagggcagt agtgactgag tcctaagctc ctactccctc tccgtcccac
      241 gcgcctgggc tgcggagcca tgctctgttg cttgctggca agggccagca acctccccaa
      301 tgtgaagaag gaccggcgca gcgatccagt tgccagcctg atttttcgag gggtaaagaa
      361 gagaaccaaa gtcatcaaga acagtgtgaa ccccgtgtgg aatgagggct ttgagtggga
      421 cctcaaaggt attcctctag atcagagctc agaacttctc gtggtggtca aggaccatga
      481 gacgatggga agaaacaggt tcctggggga agccaagatc ccactccagg aggtccttgc
      541 cacccccagc ctctctgcca gcttcaacgc acctctgcta gacgccaagc agcaacccac
      601 gggggcctct ctggtcctgc aggtgtccta cacgccaccc ccaggagctg tgcccctgtt
      661 cccaccacct gcttctctag caccctcccc gacactgcct gacatggatc tggtgcctgg
      721 tgggggacag agccgggctg agacttggtc cctgctcagt gacagcacca tggacacgag
      781 atactctggg aagaagtggc cggtccccac ggacacagga ggggaggaag acaccgagga
      841 ccagggcctg actggagatg aagctgagcc gttcctggac cagagtgctg ctgtgggccc
      901 agggggaccg accacaccca ggaagccacc ttcccaccct cctccccact atccaggggc
      961 aaaaagaaaa agaagctctg ccccacctag aaagctgctg tcagacaagc cacaggactt
     1021 ccagatcaga gtccaggtga tagaggggcg tcagctgcct ggggtgaata ttaagcctgt
     1081 ggtcaaggtc acagctgctg ggcagaccaa gcgaactcgg atccagaagg gaaatagccc
     1141 actcttcaat gagactcttt tcttcaacgt atttgactct cccttggagc tgtttgatga
     1201 gcccatcttc atcacggtgg tggactcacg ctcccttagg acagatgccc tccttggcga
     1261 gttccggatg gatgtgggca ccgtgtacag agagccccga cacgcttatc tccggaagtg
     1321 gctgctgctc tccgaccctg atgacttctc tgcgggggcc agaggctacc tcaaagccag
     1381 cctgtgtgtg ctagggcctg gagatgaagc tcccctggac aagaaggacc cttctgaaga
     1441 caaagaggac attgaaggca acctgcttag gcccaccggt gtggcccttc gaggagccca
     1501 cttctgcctg aagctcttcc gggctgagga cttaccacag atggacgatg ctgtgatgga
     1561 caacgtcaag cagatctttg gctttgacag caacaagaag aacttggtgg atccctttgt
     1621 ggaagtcagc tttgctggga aaatgctctg cagcaagatc ctggagaaga cagctaaccc
     1681 tcagtggaac cagaacatca ccttgcctgc gatgtttccc tctatgtgtg aaaaaatgag
     1741 gattcgtgtc atggactggg accgcctcac tcacaatgac actgtggcca ccacctactt
     1801 gggtatgtcg aaaatctctg ctactggagg agaaatagaa gaggagcctg caggtgtact
     1861 caagagtcca caagccactg acctggacga caacctgggc ttcctcccca cttttgggcc
     1921 ctgctatgtg aacctctatg gcagtccccg agagttcacg ggcttcccag atccttatgc
     1981 agagctcaac acaggaaagg gagaaggtgt ggcttatcga ggcagggttc tgttgtccct
     2041 ggagaccaaa ctggtggaac acagtgagca gaaggtggaa gaccttcctg ctgatgatat
     2101 cctgcgtgtg gagaagtacc tgcggaggcg caaatattcc ctctttgctg ccttctactc
     2161 agccacaatg ctgcaggatg tggatgacgc catccagttc gaggtcagca ttgggaacta
     2221 cgggaacaag ttcgacacca cctgcctgcc cttggcctcc accacccagt acagccgggc
     2281 ggtctttgat ggatgccact actattactt gccttggggc aacgtgaagc ccgtggtggt
     2341 gctgtcctca tactgggaag acatcagcca tcgaattgag atccaaaacc agctcctcag
     2401 ggtcgctgac cgcctggaag ctaacctgga gcaggtccac ttggctctga aggcacagtg
     2461 ttcctccgag gatgtggacg ccctggtggc tcagttgaca gatgagctcc ttgcagactg
     2521 cagccagccc ctgtgtgaca tccacgagat accttctgcc acccaccttg atcagtacct
     2581 gctccggcta cgcacccgtc acctgagcca gatcaaagaa gctgctctgg ccttgaagct
     2641 tggccatagt gagctctcca ctgccctgga gcaggccgag gactggcttc tgcatctccg
     2701 tgccctggcc gaggagcccc agaacagcct gccggacatc atcatctgga tgctgcaggg
     2761 tgacaagcgt gtggcctacc agcgggtgcc tgcccatgaa gtcctcttct cccggcgggg
     2821 ccccagctac tgcggcagga actgtgggaa gctgcagacc atctttctga aatatcctat
     2881 ggaaggtatg cctggggccc gaatgcccgt gcagattcgg atcaagctct ggttcgggct
     2941 ctctgtggat gagaaggaat tcaatcagtt tgctgaggga aagctctctg tctttgccga
     3001 aacgtatgag aaccagacaa agctggcact ggtcgggaac tggggcacaa cgggcctcac
     3061 ctaccccaag ttttctgatg tcacaggcaa gatcaaacta ccaaaggata gcttccgccc
     3121 ctcagctggc tgggcctggg caggagattg gttcgtgtgt ccagagaaga ccctactcca
     3181 tgatgctgac gctggtcatc tgagcttcgt ggaggaggtg ttcgagaacc agacccggct
     3241 ccctgggggc cagtggattt acatgagtga taactacaca gatgtgaatg gggagaaggt
     3301 acttccgaag gatgatattg aatgcccgct gggctggaag tgggaagatg aagaatggtc
     3361 cacagacctc aatcgggctg ttgatgaaca aggctgggag tacagcatca ccataccccc
     3421 agaccgaaag ccaaaacact gggtccctgt tgagaagatg tattacactc acaggcgtcg
     3481 acgctgggtc cgactgcgca ggagggacct cagccagatg gaagcactga agaggcacag
     3541 gcaggcagag gccgagggcg agggctggga gtatgcctct ctcttcggct ggaagttcca
     3601 cctggagtac cgcaagacag atgccttccg ccgccgccgc tggcgccgcc gcatggagcc
     3661 gctggagaag acgggacctg cagctgtgtt tgccctcgag ggggccctgg gcggcatggt
     3721 ggatgacaag agcgaagact ccatgtctgt ttctaccctg agctttggcg ttaacagacc
     3781 cacaatctcc tgcatctttg actatgggaa ccgctaccat ctgcgctgct acctgtacca
     3841 ggcccgagac ctgccagcca tggacaagga ctccttctct gatccctacg ccatcgtctc
     3901 cttcctgcat caaagccaga agacagtggt ggagaagaac accctgaatc ccacctggga
     3961 tcaaaccctc atcttctatg agattgagat cttcggcgag ccagccagta tcgccgagca
     4021 tccgccctgc atcgtggtgg agctctatga ccacgacacc tatggtgctg acgagttcat
     4081 gggtcgctgt atttgtcagc caagcctgga acggatgccc cgcctggcct ggttcccact
     4141 gacccggggc agccagcctg ccggcgagct gctggcagcg ttcgagctta tccagagaga
     4201 gaagccagcc atccatcaca tccctggctt tgagatgcat gaaacttcaa ggattttgga
     4261 tgagacggag gacacagatt tgccttaccc accacctcaa agggaggcca acatctacat
     4321 ggttccccag aacattaagc cagctctcca acgtactgcc attgagatcc tggcctgggg
     4381 cctgcggaac atgaagagct atcagatggc cagcatctct tcccccagcc tcgtggtgga
     4441 gtgtggtggg cagacagtgc agtcctgtgt catcagaaac cttcggaaga accccaactt
     4501 tgatgtctgt actctcttca tggaagtgat gttacccaga gaggacctct actgtccacc
     4561 tattgtggtc aaggtcattg ataatcgcca gtttggccgc cggccagttg tgggtcagtg
     4621 taccattcgc tccctggaga acttcctgtg cgacccatac tcagcagaga gtccatcccc
     4681 acagggtggc ccagatgatg tgagcttact cagccccggg gaagatgtgc tgattgacat
     4741 cgatgacaag gagcctctca ttcctgtcca gcttacagat gggctgtcaa gcttgggccc
     4801 cactaacctg acgccttctc catccagtcc tcataagatc ctcctggagg aggagttcat
     4861 tgactggtgg agcaaattct ttgcttctgt cggggagagg gaaaagtgtg gttcctacct
     4921 ggagaaggat tttgacacct tgaaggtcta tgacacacag ctggagaatg tggaggcttt
     4981 tggaggcctg tccgactttt gtaacacctt caagctctac cggggcagga ctcaggagga
     5041 gacagatgat ccatctgtca tcggagaatt taagggtctc ttcaaaattt atcccctccc
     5101 agaagatcca gccatcccca tgcccccgag acaattccat cagctggctg ctcagggtcc
     5161 ccaggaatgc ttggtccgta tttatatcgt ccgagcattt ggcttacagc ccaaggaccc
     5221 caatggcaag tgtgaccctt acatcaagat ctccataggg aagaaatcag tgagtgacca
     5281 ggataactac atcccttgca ccctggagcc tgtattcgga aagatgtttg aactcacctg
     5341 cactctacct ctggagaagg acctgaagat cacactctac gattatgacc tgctctccaa
     5401 ggatgagaag attggggaga cggtcataga cctggagaac aggctgctgt ccaagtttgg
     5461 ggctcgctgt gggctcccac agacctactg tgtctctgga ccaaatcagt ggagagatca
     5521 gctccgcccc tcccagctcc tccacctctt ctgccagcag cacaggatca aggcccccgt
     5581 gtaccggaca gaccgagtga cgtttcagga taaggactac accattgagg agatagaggc
     5641 tggcagactc ccaaacccac acctgggccc agtggaggaa cgcttagccc tgcatgtcct
     5701 tcagcaacaa ggcttggttc ctgagcatgt ggagtcacgg cctctttata gtcctctgca
     5761 gccagatatc gagcagggga agctacagat gtggattgac atatttccaa aggtgctggg
     5821 ccggcctgga cctcccttca acatcacccc acggaaagct agaaggtttt ttctgcgttg
     5881 tattatttgg aacacaaaag atgtgatctt ggatgacctc agtctcacgg gggagaagat
     5941 gagtgacatc tatgtgaaag gctggatggt gggattcgaa gaacacaagc agaagacaga
     6001 tgtgcactac cgctccctgg gtggggaggg caatttcaac tggaggttcg tgtttccctt
     6061 cgactatctg cctgctgagc aagtctgtgc tgttgccaag aaggatgcct tctggagact
     6121 cgacaagaca gagagcaaga tcccagcacg tgtggtcttc cagatctggg acaatgacaa
     6181 attctctttt gatgactttc tgggctctct gcagctggat ctcaaccgaa tgcccaagcc
     6241 agccaagacg gctgagaagt gctccttgga ccagctggat gacaccttcc acccagaatg
     6301 gtttgtgtcc ctttttgagc agaagacagt gaaaggatgg tggccttgtg tgacagagga
     6361 gggcgagaag aagatgttgg cgggcaagct ggaaatgacc ttggagattg ttgcagaaag
     6421 tgaacatgaa gagcggcctg ctggccaagg tcgggatgaa cccaacatga atccgaagct
     6481 agaggatcca aggcgccccg atacttcttt cctgtggttc acctccccgt acaagaccat
     6541 gaagttcatc ttgtggcgac gcttccggtg tgccatcatc ctcttcatca tcctcttcat
     6601 cctcctgctc ttcctgggtg tctttgtcta cgccttcccg aactacgctg ccatgaagct
     6661 ggtgaagccc tttcgatgaa gaagacatct gctctggaga agggggtgca ggctgcctcc
     6721 tggcccagga ctagctgctc ctccattgct ctggggcctg gtggtcttgc gcatgtccat
     6781 ggagttcttg ggaatcacgt tattttcatc ttctctttct cccctaaccc aacactcctc
     6841 tggataaact cttggctttc tcagtataaa gcagacagaa ccagaaaata tattgctatg
     6901 tgtctaca
//
