LOCUS       NM_001379131            1601 bp    mRNA    linear   ROD 14-JUN-2024
DEFINITION  Mus musculus dynein light chain Tctex-type 5 (Dynlt5), transcript
            variant 5, mRNA.
ACCESSION   NM_001379131 XM_030253722
VERSION     NM_001379131.2
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1601)
  AUTHORS   Bailey,P.J., Klos,J.M., Andersson,E., Karlen,M., Kallstrom,M.,
            Ponjavic,J., Muhr,J., Lenhard,B., Sandelin,A. and Ericson,J.
  TITLE     A global genomic transcriptional code associated with CNS-expressed
            genes
  JOURNAL   Exp Cell Res 312 (16), 3108-3119 (2006)
   PUBMED   16919269
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL732543.8.
            
            On Jan 6, 2023 this sequence version replaced NM_001379131.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR5189685.122528.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-210               AL732543.8         156158-156367
            211-302             AL732543.8         158363-158454
            303-394             AL732543.8         162276-162367
            395-519             AL732543.8         172239-172363
            520-1601            AL732543.8         173922-175003
FEATURES             Location/Qualifiers
     source          1..1601
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 47.25 cM"
     gene            1..1601
                     /gene="Dynlt5"
                     /gene_synonym="1700055O19Rik; Tctex1d1"
                     /note="dynein light chain Tctex-type 5"
                     /db_xref="GeneID:67344"
                     /db_xref="MGI:MGI:1914594"
     exon            1..210
                     /gene="Dynlt5"
                     /gene_synonym="1700055O19Rik; Tctex1d1"
                     /inference="alignment:Splign:2.1.0"
     exon            211..302
                     /gene="Dynlt5"
                     /gene_synonym="1700055O19Rik; Tctex1d1"
                     /inference="alignment:Splign:2.1.0"
     exon            303..394
                     /gene="Dynlt5"
                     /gene_synonym="1700055O19Rik; Tctex1d1"
                     /inference="alignment:Splign:2.1.0"
     CDS             373..723
                     /gene="Dynlt5"
                     /gene_synonym="1700055O19Rik; Tctex1d1"
                     /note="isoform 2 is encoded by transcript variant 5;
                     tctex1 domain-containing protein 1; Tctex1 domain
                     containing 1"
                     /codon_start=1
                     /product="dynein light chain Tctex-type 5 isoform 2"
                     /protein_id="NP_001366060.1"
                     /db_xref="GeneID:67344"
                     /db_xref="MGI:MGI:1914594"
                     /translation="MENTYQLGPTKPFPVATVNHILEDVLTTYLQEAQYDPEFCRQMT
                     KTISEVIKTQVKELVIPRYKLIVIVYIGQRDDQSIVIGSRCLWNPKSDTVSSYTFKNS
                     TFFALANVYAVYFE"
     exon            395..519
                     /gene="Dynlt5"
                     /gene_synonym="1700055O19Rik; Tctex1d1"
                     /inference="alignment:Splign:2.1.0"
     exon            520..1601
                     /gene="Dynlt5"
                     /gene_synonym="1700055O19Rik; Tctex1d1"
                     /inference="alignment:Splign:2.1.0"
     regulatory      931..936
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Dynlt5"
                     /gene_synonym="1700055O19Rik; Tctex1d1"
                     /note="hexamer: CATAAA"
     polyA_site      955
                     /gene="Dynlt5"
                     /gene_synonym="1700055O19Rik; Tctex1d1"
                     /note="major polyA site"
     regulatory      1582..1587
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Dynlt5"
                     /gene_synonym="1700055O19Rik; Tctex1d1"
                     /note="hexamer: AATAAA"
     polyA_site      1601
                     /gene="Dynlt5"
                     /gene_synonym="1700055O19Rik; Tctex1d1"
ORIGIN      
        1 gcagtgtggc tttgaaacca tgcctccttc aggccctgca ggagatgtct atcgtctggc
       61 cttgaccatc agttccgttc ctctcagatg aacagtagcc caccacgtca agagctggcc
      121 ctgcgctttt acccacacct atgattgttc tgccagtctc ctgtgctagg ttttacatct
      181 gtcagtccag ggcttgactg ttcatgggag acacatggga gcaagcagca ggcacagcgg
      241 ctggagcagg gtgctgaaag cttacgtcat ggagcacagg cacagagcag agagaacaac
      301 gtttccctca gtaccgtgtc ccacgcggat gagcccagcc agcgtgatga atcctctcgc
      361 ctcacagtcc ggatggaaaa cacctaccag ttaggtccca ccaaaccttt ccccgtggcc
      421 actgtcaatc atattttgga agatgtacta actacctacc tacaagaagc acaatatgac
      481 ccagagttct gcagacaaat gactaaaaca atttctgagg ttattaagac ccaggtcaag
      541 gaattagtga ttccgagata taaactaatt gtcatcgttt acatcggaca gcgggatgac
      601 cagagcatag ttattggcag cagatgcctc tggaatccta aaagtgatac tgtctcgtcc
      661 tatactttca aaaattctac attctttgca cttgcaaatg tctatgcagt ttacttcgag
      721 tgattgaaag tggtccttgt gtgttaaaat catgaaccag gctgtgtgtc tctattcaca
      781 aaagttctac tggcaaaacc tgtgggaaag agacaagatg aagatttcaa acaactggaa
      841 gctttggtcg ctctcgtgag gactggtgga gggggacggg agcctaagaa acaggtcctg
      901 tttgttcaaa gcagaagtca gtgccattca cataaatgta gatgctgaca aaatatcact
      961 ctgagtgcta attattttga tttctctttt agttggagag ctagaatttc ctggaccact
     1021 ttctggtaaa cttctagaaa taaatggcaa catactctgg atatatacca cacaggatat
     1081 atccacatag gataattcaa catgacacac aaaaatggtg aatatgaata ggccttagta
     1141 ctgcatataa aataataccg gttttcattt tacatttaat aaattgagca gcactcatta
     1201 gctgcaatta ctgttacatg tacctgacag ttgaaagtac tgacatagaa ttaatgattt
     1261 cgtaataatt accatggtcc cgtggggcca ctggctaaat ctagacgctc ttgtgggttg
     1321 ccagcacttt acaaaattac aagagaactg aacattggct cttcaataat ggaaactata
     1381 aagtggatac aggcttttaa ggacactaaa gtagacattg tgctattaaa tatacatgat
     1441 gcttaatagt aaatgtgcct gtagcaccta ataccatgca ttggaaagag acactgcctt
     1501 taaatacaca tagcccatgt gcttttgact agtttttcct gacctacctt ttacccagaa
     1561 tacaaagctg gcagcttaac aaataaaaca tgtgtgtttg c
//
