LOCUS       NM_001123368             787 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Mus musculus dynein light chain Tctex-type 2A3 (Dynlt2a3),
            transcript variant 1, mRNA.
ACCESSION   NM_001123368 XM_001477686 XM_001477697
VERSION     NM_001123368.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 787)
  AUTHORS   Huw,L.Y., Goldsborough,A.S., Willison,K. and Artzt,K.
  TITLE     Tctex2: a sperm tail surface protein mapping to the t-complex
  JOURNAL   Dev Biol 170 (1), 183-194 (1995)
   PUBMED   7601308
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC182749.2.
            
            On or before Apr 18, 2008 this sequence version replaced
            XM_001477686.1, XM_001477697.1.
            
            Summary: This gene is one of three genes with a very high degree of
            similarity to each other within a 77 kb genomic span on Chromosome
            17 A2. This gene is the most proximal copy of the three genes.
            [provided by RefSeq, Jul 2008].
            
            Transcript Variant: This variant (1) encodes the longer isoform
            (1).
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: U21673.1, BU939129.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-257               AC182749.2         100205-100461       c
            258-464             AC182749.2         92036-92242         c
            465-620             AC182749.2         89195-89350         c
            621-787             AC182749.2         85838-86004         c
FEATURES             Location/Qualifiers
     source          1..787
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 8.95 cM"
     gene            1..787
                     /gene="Dynlt2a3"
                     /gene_synonym="100041586; Dynlt2c; Gm3417; LC2; Tcte-3;
                     Tcte3; TCTEX-2; TCTEX-4; Tctex1d3; Tctex2; Tctex4"
                     /note="dynein light chain Tctex-type 2A3"
                     /db_xref="GeneID:100041586"
                     /db_xref="MGI:MGI:3781595"
     exon            1..257
                     /gene="Dynlt2a3"
                     /gene_synonym="100041586; Dynlt2c; Gm3417; LC2; Tcte-3;
                     Tcte3; TCTEX-2; TCTEX-4; Tctex1d3; Tctex2; Tctex4"
                     /inference="alignment:Splign:2.1.0"
     CDS             156..731
                     /gene="Dynlt2a3"
                     /gene_synonym="100041586; Dynlt2c; Gm3417; LC2; Tcte-3;
                     Tcte3; TCTEX-2; TCTEX-4; Tctex1d3; Tctex2; Tctex4"
                     /note="isoform 1 is encoded by transcript variant 1;
                     Tctex1 domain-containing protein 3; T-complex
                     testis-specific protein 2; T-complex testis-specific
                     protein 3; T-complex-associated testis-expressed protein
                     3; T-complex-associated testis-expressed protein 4; dynein
                     light chain Tctex-type 2C"
                     /codon_start=1
                     /product="t-complex-associated testis expressed 3-like
                     isoform 1"
                     /protein_id="NP_001116840.1"
                     /db_xref="CCDS:CCDS49959.1"
                     /db_xref="GeneID:100041586"
                     /db_xref="MGI:MGI:3781595"
                     /translation="MERRGRMAKTPTGQTHQSPVSKRERKPSMFEKESYAQILRERLR
                     ESFHDVQYVEPPFDDSIADVGKEWKSALAKLKFANSYRMEPLKKFQAHLVETKIQQIL
                     KDSLKDVKYDDKAPHLSLELADGILAAVKEFAYHRYKFIIQVLFIQKTGQAINIASRW
                     IWDVAWDNWVEAKHETESYVVLALVFALYCE"
     exon            258..464
                     /gene="Dynlt2a3"
                     /gene_synonym="100041586; Dynlt2c; Gm3417; LC2; Tcte-3;
                     Tcte3; TCTEX-2; TCTEX-4; Tctex1d3; Tctex2; Tctex4"
                     /inference="alignment:Splign:2.1.0"
     exon            465..620
                     /gene="Dynlt2a3"
                     /gene_synonym="100041586; Dynlt2c; Gm3417; LC2; Tcte-3;
                     Tcte3; TCTEX-2; TCTEX-4; Tctex1d3; Tctex2; Tctex4"
                     /inference="alignment:Splign:2.1.0"
     exon            621..787
                     /gene="Dynlt2a3"
                     /gene_synonym="100041586; Dynlt2c; Gm3417; LC2; Tcte-3;
                     Tcte3; TCTEX-2; TCTEX-4; Tctex1d3; Tctex2; Tctex4"
                     /inference="alignment:Splign:2.1.0"
     regulatory      766..771
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Dynlt2a3"
                     /gene_synonym="100041586; Dynlt2c; Gm3417; LC2; Tcte-3;
                     Tcte3; TCTEX-2; TCTEX-4; Tctex1d3; Tctex2; Tctex4"
                     /note="hexamer: AATAAA"
     polyA_site      784
                     /gene="Dynlt2a3"
                     /gene_synonym="100041586; Dynlt2c; Gm3417; LC2; Tcte-3;
                     Tcte3; TCTEX-2; TCTEX-4; Tctex1d3; Tctex2; Tctex4"
                     /note="major polyA site"
ORIGIN      
        1 gactcacgtg cctctcttcc ccggcttccg ggacgcggct gcacgcggcg taggcgcgag
       61 ccctgtgctc cgcggcatct gagcagggcc gttgggcagt tacacggcgg agggcggagg
      121 gcggagggcg gaggcgtccc ggtgagccga tcaagatgga gcggcgaggc cgaatggcga
      181 agacgcccac cggccaaacg catcaatccc cggtgtctaa gagagaaagg aagcctagca
      241 tgttcgagaa ggagtcatat gcacagatct taagagaaag actgagagag tcttttcatg
      301 atgttcagta cgtggaacct ccgtttgatg actcaattgc tgatgtaggc aaagaatgga
      361 aaagtgccct ggcaaaatta aagtttgcta attcatacag aatggagcca ctgaagaaat
      421 ttcaagcaca tttggtagaa actaaaatcc agcagatatt aaaggacagt cttaaagatg
      481 tcaaatatga tgacaaagcc cctcatttgt cacttgaatt ggcagatgga atattggcag
      541 cagtcaaaga atttgcatac catcgttata aattcattat acaagtatta tttattcaaa
      601 agactggtca agcaataaat attgccagca gatggatctg ggatgtggca tgggacaact
      661 gggtagaagc taaacatgaa acagagtctt acgtggtatt ggccttggtg tttgctctct
      721 attgtgaata gctcaggacc agcattttca ccccccatcc ttcaaaataa atgatatata
      781 cagatct
//
