LOCUS       NM_001418551            1863 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus DPY30 domain containing 2 (Dydc2), transcript variant
            4, mRNA.
ACCESSION   NM_001418551 XM_011245192
VERSION     NM_001418551.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1863)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1863)
  AUTHORS   Stauber,M., Weidemann,M., Dittrich-Breiholz,O., Lobschat,K.,
            Alten,L., Mai,M., Beckers,A., Kracht,M. and Gossler,A.
  TITLE     Identification of FOXJ1 effectors during ciliogenesis in the foetal
            respiratory epithelium and embryonic left-right organiser of the
            mouse
  JOURNAL   Dev Biol 423 (2), 170-188 (2017)
   PUBMED   27914912
REFERENCE   3  (bases 1 to 1863)
  AUTHORS   McClintock,T.S., Glasser,C.E., Bose,S.C. and Bergman,D.A.
  TITLE     Tissue expression patterns identify mouse cilia genes
  JOURNAL   Physiol Genomics 32 (2), 198-206 (2008)
   PUBMED   17971504
  REMARK    GeneRIF: Dydc2 is most abundantly expressed in tissues rich in
            highly ciliated cells, such as olfactory sensory neurons, and is
            predicted to be important to cilia.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC154597.2.
            
            On Mar 21, 2023 this sequence version replaced XM_011245192.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: ERR3363658.1986861.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849384 [ECO:0006172]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-198               AC154597.2         153553-153750       c
            199-749             AC154597.2         147626-148176       c
            750-905             AC154597.2         146898-147053       c
            906-1028            AC154597.2         146444-146566       c
            1029-1863           AC154597.2         133165-133999       c
FEATURES             Location/Qualifiers
     source          1..1863
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="14"
                     /map="14 22.36 cM"
     gene            1..1863
                     /gene="Dydc2"
                     /gene_synonym="4933428D01Rik"
                     /note="DPY30 domain containing 2"
                     /db_xref="GeneID:71200"
                     /db_xref="MGI:MGI:1918450"
     exon            1..198
                     /gene="Dydc2"
                     /gene_synonym="4933428D01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            199..749
                     /gene="Dydc2"
                     /gene_synonym="4933428D01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            750..905
                     /gene="Dydc2"
                     /gene_synonym="4933428D01Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             759..1178
                     /gene="Dydc2"
                     /gene_synonym="4933428D01Rik"
                     /codon_start=1
                     /product="DPY30 domain-containing protein 2"
                     /protein_id="NP_001405480.1"
                     /db_xref="GeneID:71200"
                     /db_xref="MGI:MGI:1918450"
                     /translation="MDTAYLKNCFGTGLTQALAEVARVRPSDPIEYLAHWLYHYRSIT
                     VAEEKRRQEELQLKEARDRSAEEAKTTEMLKEEGYQIQQKCEKCHQELPSTSFSSDKT
                     PALQEDTAPLEEKTMRQESQPGASRVISEMPQRAIPS"
     exon            906..1028
                     /gene="Dydc2"
                     /gene_synonym="4933428D01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1029..1863
                     /gene="Dydc2"
                     /gene_synonym="4933428D01Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1341..1346
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Dydc2"
                     /gene_synonym="4933428D01Rik"
                     /note="hexamer: ATTAAA"
     regulatory      1350..1355
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Dydc2"
                     /gene_synonym="4933428D01Rik"
                     /note="hexamer: AATAAG"
     polyA_site      1362
                     /gene="Dydc2"
                     /gene_synonym="4933428D01Rik"
                     /note="major polyA site"
     polyA_site      1366
                     /gene="Dydc2"
                     /gene_synonym="4933428D01Rik"
     regulatory      1501..1506
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Dydc2"
                     /gene_synonym="4933428D01Rik"
                     /note="hexamer: AATAGA"
     polyA_site      1522
                     /gene="Dydc2"
                     /gene_synonym="4933428D01Rik"
     regulatory      1845..1850
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Dydc2"
                     /gene_synonym="4933428D01Rik"
                     /note="hexamer: AATAAT"
     polyA_site      1863
                     /gene="Dydc2"
                     /gene_synonym="4933428D01Rik"
ORIGIN      
        1 ctgtacttaa gggtaaatat gtgtgagttg gttaaaatcc ttcaccaccc ttgactgata
       61 atgtgccaag tcctctcaag actgatgacc actgggactc atggtctgac gtattccagc
      121 tgaaaaggca taggaaagat gcctgcttga ctgtaacagc tattggcaag tataatttgg
      181 ctggttcttc taagaaagcc tcccaaggtc caggattaca gacatgacca cctgaacccg
      241 attgttttga ctaccacaaa gtcaaactga tagagttttc tccgagtgtc agaggacact
      301 taggacttgg cattttgagc agtgctagaa ctattaaaga cttcagtgcc aggcacagtt
      361 gcacatgcca tagtcctatc acttaggaga ctgtggcaag aagatgacaa gttcaaggcc
      421 aacttgggcc acactacaaa aatctgtttc aaaaaccaaa accccaagct gggtggtagt
      481 ggtggtggta gcagcaaaca aatttactcc cagcacttgg gaggcagaag caggcagatc
      541 tctgagtttg aggctagcct ggtctactga gtgagttcca ggacagtcag agctaacaca
      601 aagaacacct gtctcaaaaa aaagaagaaa aaaaaaaaca gaaacaaaac aaaagacaaa
      661 caaacaaaaa acaaaccaaa acaacaacag cagcagcaaa aaactccaga gactcttgaa
      721 gatattctga gtatattttt cattgtaaag ttctcagcat ggatactgcc tacctgaaga
      781 actgctttgg aaccggcctg acccaggcac tggcagaggt ggcaagagtg cggcccagtg
      841 acccaataga gtacctggct cactggcttt accattatag gagtataact gtagctgagg
      901 aaaagagaag gcaagaggag ctacagctta aggaagcacg tgacagaagc gctgaggaag
      961 caaaaacaac agaaatgctg aaagaagaag gctatcagat tcagcagaag tgtgaaaagt
     1021 gtcaccagga actgccctcg acctcttttt cctcagacaa gaccccagcc ctgcaggaag
     1081 acacggcacc ccttgaggag aagactatga ggcaggaatc tcaaccgggt gcctcgcgtg
     1141 tgatttctga gatgcctcaa agggctattc cctcataaaa aaatttttaa aaaggcccgt
     1201 aagaggagca ctcatctcat ctaagagtta agagactaag aaagaggggt ctactgattc
     1261 tctggtctgc tagccataac tacctttaat catgtgaagt tttgaattag ctgttagaga
     1321 aaggtgaact cagaacaaga attaaaaaca ataagtcatc aagccagtga agcctttttc
     1381 tcctgacatt acagagtgag agcgcaccct gtactgtact catcttaact ttagctgtgc
     1441 tttgcagtca gggctctgat gatccttacc tgtgtcctgg aggctgccag tggcactgat
     1501 aatagatgtt ttcttcatgc cattttttgt tggttttttt tttaattttt ttttttttat
     1561 tttggttttc gagacagggt ttctctgtat agccctggct gtcctggaac tcactttgta
     1621 gaccaggctg gcctcgaact cagaaatctg cctgcctctg cctcccaagt gctaggatca
     1681 aaggcgtgtg ccaccacacc cggctccatt ttttattatg ataaaacaca tgacctaaaa
     1741 tttacagttc ggtgacctta acacattcat attgtgcaac tcttcctacc aatcagcatt
     1801 cagacaattt ctttaccctg taaggctgaa agtctgtccc attaaataat aactctctcc
     1861 cca
//
