LOCUS       NM_001347404            1024 bp    mRNA    linear   ROD 05-JUN-2024
DEFINITION  Mus musculus D-tyrosyl-tRNA deacylase 2 (Dtd2), transcript variant
            1, mRNA.
ACCESSION   NM_001347404 XM_017315118
VERSION     NM_001347404.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1024)
  AUTHORS   Kuncha,S.K., Mazeed,M., Singh,R., Kattula,B., Routh,S.B. and
            Sankaranarayanan,R.
  TITLE     A chiral selectivity relaxed paralog of DTD for proofreading tRNA
            mischarging in Animalia
  JOURNAL   Nat Commun 9 (1), 511 (2018)
   PUBMED   29410408
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY069987.1, AK016300.1 and BY423647.1.
            
            On Nov 26, 2016 this sequence version replaced XM_017315118.1.
            
            Transcript Variant: This variant (1) represents the shorter
            transcript and encodes the shorter isoform (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK016300.1, BY715933.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164143 [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-6                 BY069987.1         2-7
            7-1018              AK016300.1         2-1013
            1019-1024           BY423647.1         372-377
FEATURES             Location/Qualifiers
     source          1..1024
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="12"
                     /map="12 22.11 cM"
     gene            1..1024
                     /gene="Dtd2"
                     /gene_synonym="4930578F06Rik; 6530401N04Rik; ATD;
                     B830049N13Rik"
                     /note="D-tyrosyl-tRNA deacylase 2"
                     /db_xref="GeneID:328092"
                     /db_xref="MGI:MGI:1923485"
     exon            1..133
                     /gene="Dtd2"
                     /gene_synonym="4930578F06Rik; 6530401N04Rik; ATD;
                     B830049N13Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             23..523
                     /gene="Dtd2"
                     /gene_synonym="4930578F06Rik; 6530401N04Rik; ATD;
                     B830049N13Rik"
                     /EC_number="3.1.1.96"
                     /note="isoform 1 is encoded by transcript variant 1;
                     probable D-tyrosyl-tRNA(Tyr) deacylase 2; putative
                     D-tyrosyl-tRNA deacylase 2; putative D-tyrosyl-tRNA(Tyr)
                     deacylase 2; L-alanyl-tRNA deacylase; animalia-specifc
                     tRNA deacylase; D-aminoacyl-tRNA deacylase 2;
                     animalia-specific tRNA deacylase"
                     /codon_start=1
                     /product="D-aminoacyl-tRNA deacylase 2 isoform 1"
                     /protein_id="NP_001334333.1"
                     /db_xref="CCDS:CCDS83962.1"
                     /db_xref="GeneID:328092"
                     /db_xref="MGI:MGI:1923485"
                     /translation="MADGGRVAQARALLQQCLHARLQVRPADGDAAAQWVEIRRGLVI
                     YVCFFKGADTDLLPKMVNTLLNVKLSETETGKHVSILDLPGDVLIIPQATLGGRVKGR
                     SMQYHSNSGKEEGSELYSQFVSLCEKAVANNTKSVEAGVAVAHGTYGNRWSHTQKELQ
                     TLLTAF"
     exon            134..203
                     /gene="Dtd2"
                     /gene_synonym="4930578F06Rik; 6530401N04Rik; ATD;
                     B830049N13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            204..474
                     /gene="Dtd2"
                     /gene_synonym="4930578F06Rik; 6530401N04Rik; ATD;
                     B830049N13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            475..1024
                     /gene="Dtd2"
                     /gene_synonym="4930578F06Rik; 6530401N04Rik; ATD;
                     B830049N13Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1003..1008
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Dtd2"
                     /gene_synonym="4930578F06Rik; 6530401N04Rik; ATD;
                     B830049N13Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      1021
                     /gene="Dtd2"
                     /gene_synonym="4930578F06Rik; 6530401N04Rik; ATD;
                     B830049N13Rik"
                     /note="major polyA site"
ORIGIN      
        1 atgcgcagtg cggacccgcg ccatggcgga cggtggtcgt gtggcccagg ctcgtgcgct
       61 cctgcagcag tgcctgcacg ctcgcctgca agtgcgcccg gccgatggag acgccgcggc
      121 gcagtgggtg gagattcgga gaggattggt gatctatgtg tgtttcttca agggagctga
      181 cacagacctt ctccccaaaa tggttaatac gctgttaaat gtgaagttaa gcgaaacgga
      241 aaccggcaag cacgtctcca tcctcgatct gcctggcgat gttctgatca tcccgcaagc
      301 caccctcggg ggcagggtga aagggcggag catgcagtac cactctaact ctggaaagga
      361 ggagggctca gaactgtact cccagtttgt gagtctgtgt gaaaaagccg tggccaacaa
      421 caccaagagt gtagaagcgg gggttgcggt ggcgcacggc acgtacggga acaggtggag
      481 ccacacacag aaggagttgc agacattgct cacagccttt tgatgattca tagatctctg
      541 tttccctggc aagcaagctc acaccagcca agctcactac aagtgctggc tacccggcat
      601 tccctgtcca ctgttggtga cctcattctc ttctccttcc tcctctttaa aaacaaacaa
      661 gcacaaaaca tggcttttct cctctggatc ttagcagaag ccatggcgag tttaaaactt
      721 tatataagtg agaaatgaaa tatctaggct ggacgtggtg ctgcagaccc tattcatctg
      781 agcactcggg aggcagagtc aggtgaatct ctatgaactg gaggataatc tggtctacaa
      841 agtaagttct agaccagcta agctaagact atgtagtgag actgtgtctt tgaaaaggag
      901 agaagaagga gaaggaggaa gaagaggagg aaaaaataga agaggaggaa gagagaaaat
      961 aataatgata atgatgatga tgtctgatag tttgaagcaa ctattaaact ttgtgccctc
     1021 agcc
//
