LOCUS       NM_025314               1283 bp    mRNA    linear   ROD 24-DEC-2024
DEFINITION  Mus musculus D-tyrosyl-tRNA deacylase 1 (Dtd1), mRNA.
ACCESSION   NM_025314 XM_918086
VERSION     NM_025314.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1283)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1283)
  AUTHORS   Eom,T., Zhang,C., Wang,H., Lay,K., Fak,J., Noebels,J.L. and
            Darnell,R.B.
  TITLE     NOVA-dependent regulation of cryptic NMD exons controls synaptic
            protein levels after seizure
  JOURNAL   Elife 2, e00178 (2013)
   PUBMED   23359859
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY294360.1, AK011917.1, AK003594.1 and BE633558.1.
            
            On Dec 23, 2008 this sequence version replaced NM_025314.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK158898.1, AK003594.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: inferred from homology
            RefSeq Select criteria             :: based on single
                                                  protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-32                BY294360.1         1-32
            33-691              AK011917.1         1-659
            692-1255            AK003594.1         664-1227
            1256-1283           BE633558.1         321-348
FEATURES             Location/Qualifiers
     source          1..1283
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 71.02 cM"
     gene            1..1283
                     /gene="Dtd1"
                     /gene_synonym="0610006H08Rik; DTD; DUE-B; Hars2"
                     /note="D-tyrosyl-tRNA deacylase 1"
                     /db_xref="GeneID:66044"
                     /db_xref="MGI:MGI:1913294"
     exon            1..139
                     /gene="Dtd1"
                     /gene_synonym="0610006H08Rik; DTD; DUE-B; Hars2"
                     /inference="alignment:Splign:2.1.0"
     CDS             97..726
                     /gene="Dtd1"
                     /gene_synonym="0610006H08Rik; DTD; DUE-B; Hars2"
                     /EC_number="3.1.1.96"
                     /note="D-tyrosyl-tRNA(Tyr) deacylase 1; D-tyrosyl-tRNA
                     deacylase 1 homolog; DNA-unwinding element-binding protein
                     B; gly-tRNA(Ala) deacylase"
                     /codon_start=1
                     /product="D-aminoacyl-tRNA deacylase 1"
                     /protein_id="NP_079590.1"
                     /db_xref="CCDS:CCDS16824.1"
                     /db_xref="GeneID:66044"
                     /db_xref="MGI:MGI:1913294"
                     /translation="MKAVVQRVTRASVTVGGEQISAIGRGICVLLGISMEDSQKELEH
                     MVRKILNLRVFEDESGKHWSKSVMDKEYEVLCVSQFTLQCVLKGNKPDFHLAMPTEQA
                     ESFYNSFLEQLRKSYRPELIRDGKFGAYMQVHIQNDGPVTIELESPAPGAASSDPKQL
                     SKLEKQQQRKEKTRAKGPSESSKERNAPRKEDRSASSGAEGDVSSEREP"
     exon            140..230
                     /gene="Dtd1"
                     /gene_synonym="0610006H08Rik; DTD; DUE-B; Hars2"
                     /inference="alignment:Splign:2.1.0"
     exon            231..466
                     /gene="Dtd1"
                     /gene_synonym="0610006H08Rik; DTD; DUE-B; Hars2"
                     /inference="alignment:Splign:2.1.0"
     exon            467..573
                     /gene="Dtd1"
                     /gene_synonym="0610006H08Rik; DTD; DUE-B; Hars2"
                     /inference="alignment:Splign:2.1.0"
     exon            574..746
                     /gene="Dtd1"
                     /gene_synonym="0610006H08Rik; DTD; DUE-B; Hars2"
                     /inference="alignment:Splign:2.1.0"
     exon            747..1283
                     /gene="Dtd1"
                     /gene_synonym="0610006H08Rik; DTD; DUE-B; Hars2"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1236..1241
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Dtd1"
                     /gene_synonym="0610006H08Rik; DTD; DUE-B; Hars2"
                     /note="hexamer: AATAAA"
     polyA_site      1249
                     /gene="Dtd1"
                     /gene_synonym="0610006H08Rik; DTD; DUE-B; Hars2"
                     /note="major polyA site"
     regulatory      1254..1259
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Dtd1"
                     /gene_synonym="0610006H08Rik; DTD; DUE-B; Hars2"
                     /note="hexamer: AATGAA"
     polyA_site      1275
                     /gene="Dtd1"
                     /gene_synonym="0610006H08Rik; DTD; DUE-B; Hars2"
ORIGIN      
        1 ttccggtgtt gccggtagag ggcgccggtc gaggagccac cggcggagtc gcaaggtctg
       61 accacacagc aaattccagt cgctacagcc gccgccatga aggccgtggt gcagcgcgtc
      121 actcgggcta gcgtcacagt tggaggagag cagataagcg ccatcggacg gggcatctgt
      181 gtcttgctgg gtatttccat ggaagactca cagaaggaac tggaacacat ggttcgaaag
      241 attttaaatc tgcgtgtgtt tgaggacgag agtgggaagc actggtccaa gagcgtgatg
      301 gataaggagt acgaggtgct gtgtgtcagc cagttcaccc tccagtgcgt cctcaagggg
      361 aacaagcccg acttccacct ggccatgccc acagagcagg cagagagctt ctacaacagc
      421 ttcctggagc agcttcgcaa gagctacaga ccagagctta tcagagatgg caagtttggt
      481 gcctacatgc aggtgcacat tcagaacgat gggcctgtga ctatagagct ggagtcccct
      541 gctcctggag ctgctagctc tgacccaaag cagctgtcaa agctggagaa acagcagcag
      601 agaaaagaaa agaccagagc caaaggccct tctgagtcaa gcaaagaacg gaatgcaccc
      661 cgcaaagaag accgcagcgc cagcagcggg gcagagggtg acgtgtcttc tgagcgggag
      721 ccatagatgc ggatgcagga gctcagcaaa ttaccattgg gcagaatcgg atcctgaaaa
      781 atcaagatgc taaagcccct acactgcttt aagaattcgg gactcaaata tgaaaagaaa
      841 atcagaaata agaccctggg aacctgaata tccctgcaga aaaacaccaa aggaccattt
      901 tattttgtgt attgctgtgg tctgattggg gtagtgggtg ctgtgggatg ggagagtgct
      961 tgtgggttca cacccatgcc ctccccatgg agagggggcc attggttttc ttgctttcta
     1021 ccatgtcttg gcttgctttt ggaacaggct ggcctagcat catctgtcct catctgtggt
     1081 gtactgtgag tctgtgatcc atctccagca catgcctgct gtccaccatt tccatcattg
     1141 agtcacaaga cagggctggt gttaggcaac caataataac atattgtatg agactttgca
     1201 tcttgtacat tttctcttct tttctaaaaa taaataataa aaccataaat ctcaatgaac
     1261 tactttatta ttaaattctg ctg
//
