LOCUS       NM_001267626            3497 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus double PHD fingers 3 (Dpf3), transcript variant 2,
            mRNA.
ACCESSION   NM_001267626
VERSION     NM_001267626.2
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3497)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 3497)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 3497)
  AUTHORS   He,Y., Chen,Q., Dai,J., Cui,Y., Zhang,C., Wen,X., Li,J., Xiao,Y.,
            Peng,X., Liu,M., Shen,B., Sha,J., Hu,Z., Li,J. and Shu,W.
  TITLE     Single-cell RNA-Seq reveals a highly coordinated transcriptional
            program in mouse germ cells during primordial follicle formation
  JOURNAL   Aging Cell 20 (7), e13424 (2021)
   PUBMED   34174788
REFERENCE   4  (bases 1 to 3497)
  AUTHORS   Basta,J.M., Singh,A.P., Robbins,L., Stout,L., Pherson,M. and
            Rauchman,M.
  TITLE     The core SWI/SNF catalytic subunit Brg1 regulates nephron
            progenitor cell proliferation and differentiation
  JOURNAL   Dev Biol 464 (2), 176-187 (2020)
   PUBMED   32504627
REFERENCE   5  (bases 1 to 3497)
  AUTHORS   Zhu,X., Lan,B., Yi,X., He,C., Dang,L., Zhou,X., Lu,Y., Sun,Y.,
            Liu,Z., Bai,X., Zhang,K., Li,B., Li,M.J., Chen,Y. and Zhang,L.
  TITLE     HRP2-DPF3a-BAF complex coordinates histone modification and
            chromatin remodeling to regulate myogenic gene transcription
  JOURNAL   Nucleic Acids Res 48 (12), 6563-6582 (2020)
   PUBMED   32459350
  REMARK    GeneRIF: HRP2-DPF3a-BAF complex coordinates histone modification
            and chromatin remodeling to regulate myogenic gene transcription.
REFERENCE   6  (bases 1 to 3497)
  AUTHORS   de la Serna,I.L., Carlson,K.A. and Imbalzano,A.N.
  TITLE     Mammalian SWI/SNF complexes promote MyoD-mediated muscle
            differentiation
  JOURNAL   Nat Genet 27 (2), 187-190 (2001)
   PUBMED   11175787
REFERENCE   7  (bases 1 to 3497)
  AUTHORS   Zhang,H.S., Gavin,M., Dahiya,A., Postigo,A.A., Ma,D., Luo,R.X.,
            Harbour,J.W. and Dean,D.C.
  TITLE     Exit from G1 and S phase of the cell cycle is regulated by
            repressor complexes containing HDAC-Rb-hSWI/SNF and Rb-hSWI/SNF
  JOURNAL   Cell 101 (1), 79-89 (2000)
   PUBMED   10778858
REFERENCE   8  (bases 1 to 3497)
  AUTHORS   Phelan,M.L., Sif,S., Narlikar,G.J. and Kingston,R.E.
  TITLE     Reconstitution of a core chromatin remodeling complex from SWI/SNF
            subunits
  JOURNAL   Mol Cell 3 (2), 247-253 (1999)
   PUBMED   10078207
REFERENCE   9  (bases 1 to 3497)
  AUTHORS   Wang,W., Xue,Y., Zhou,S., Kuo,A., Cairns,B.R. and Crabtree,G.R.
  TITLE     Diversity and specialization of mammalian SWI/SNF complexes
  JOURNAL   Genes Dev 10 (17), 2117-2130 (1996)
   PUBMED   8804307
REFERENCE   10 (bases 1 to 3497)
  AUTHORS   Chestkov,A.V., Baka,I.D., Kost,M.V., Georgiev,G.P. and Buchman,V.L.
  TITLE     The d4 gene family in the human genome
  JOURNAL   Genomics 36 (1), 174-177 (1996)
   PUBMED   8812431
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC139382.3, AC205767.5 and CT025545.28.
            
            On Oct 19, 2020 this sequence version replaced NM_001267626.1.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK012970.1, SRR9219382.61322.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-60                AC139382.3         100752-100811       c
            61-221              AC205767.5         102806-102966       c
            222-329             CT025545.28        4550-4657
            330-457             CT025545.28        23455-23582
            458-553             CT025545.28        30412-30507
            554-632             CT025545.28        39975-40053
            633-770             CT025545.28        60946-61083
            771-899             CT025545.28        82978-83106
            900-3497            CT025545.28        85818-88415
FEATURES             Location/Qualifiers
     source          1..3497
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="12"
                     /map="12 38.64 cM"
     gene            1..3497
                     /gene="Dpf3"
                     /gene_synonym="2810403B03Rik; 6530402L11Rik; BAF45C;
                     cer-d4; CERD4; Gm18872"
                     /note="double PHD fingers 3"
                     /db_xref="GeneID:70127"
                     /db_xref="MGI:MGI:1917377"
     exon            1..60
                     /gene="Dpf3"
                     /gene_synonym="2810403B03Rik; 6530402L11Rik; BAF45C;
                     cer-d4; CERD4; Gm18872"
                     /inference="alignment:Splign:2.1.0"
     CDS             29..1102
                     /gene="Dpf3"
                     /gene_synonym="2810403B03Rik; 6530402L11Rik; BAF45C;
                     cer-d4; CERD4; Gm18872"
                     /note="isoform 2 is encoded by transcript variant 2;
                     cerebellum D4; zinc finger protein DPF3; D4 zinc and
                     double PHD finger family 3; BRG1-associated factor 45C;
                     zinc finger protein cer-d4"
                     /codon_start=1
                     /product="zinc finger protein DPF3 isoform 2"
                     /protein_id="NP_001254555.1"
                     /db_xref="GeneID:70127"
                     /db_xref="MGI:MGI:1917377"
                     /translation="MATVIHNPLKALGDQFYKEAIEHCRSYNSRLCAERSVRLPFLDS
                     QTGVAQNNCYIWMEKRHRGPGLAPGQLYTYPARCWRKKRRLHPPEDPKLRLLEIKPEV
                     ELPLKKDGFTSESTTLEALLRGEGVEKKVDAREEESIQEIQRVLENDENVEEGNEEED
                     LEEDVPKRKNRTRGRARGSAGGRRRHDAASQEDHDKPYVCDICGKRYKNRPGLSYHYA
                     HTHLASEEGDEAQDQETRSPPNHRNENHRPQKGPDGTVIPNNYCDFCLGGSNMNKKSG
                     RPEELVSCADCGRSAHLGGEGRKEKEAAAAARTTEDLFGSTSESDTSTFYGFDEDDLE
                     EPRSCRGRRSGRGSPTADKKGSC"
     exon            61..221
                     /gene="Dpf3"
                     /gene_synonym="2810403B03Rik; 6530402L11Rik; BAF45C;
                     cer-d4; CERD4; Gm18872"
                     /inference="alignment:Splign:2.1.0"
     exon            222..329
                     /gene="Dpf3"
                     /gene_synonym="2810403B03Rik; 6530402L11Rik; BAF45C;
                     cer-d4; CERD4; Gm18872"
                     /inference="alignment:Splign:2.1.0"
     exon            330..457
                     /gene="Dpf3"
                     /gene_synonym="2810403B03Rik; 6530402L11Rik; BAF45C;
                     cer-d4; CERD4; Gm18872"
                     /inference="alignment:Splign:2.1.0"
     exon            458..553
                     /gene="Dpf3"
                     /gene_synonym="2810403B03Rik; 6530402L11Rik; BAF45C;
                     cer-d4; CERD4; Gm18872"
                     /inference="alignment:Splign:2.1.0"
     exon            554..632
                     /gene="Dpf3"
                     /gene_synonym="2810403B03Rik; 6530402L11Rik; BAF45C;
                     cer-d4; CERD4; Gm18872"
                     /inference="alignment:Splign:2.1.0"
     exon            633..770
                     /gene="Dpf3"
                     /gene_synonym="2810403B03Rik; 6530402L11Rik; BAF45C;
                     cer-d4; CERD4; Gm18872"
                     /inference="alignment:Splign:2.1.0"
     exon            771..899
                     /gene="Dpf3"
                     /gene_synonym="2810403B03Rik; 6530402L11Rik; BAF45C;
                     cer-d4; CERD4; Gm18872"
                     /inference="alignment:Splign:2.1.0"
     exon            900..3497
                     /gene="Dpf3"
                     /gene_synonym="2810403B03Rik; 6530402L11Rik; BAF45C;
                     cer-d4; CERD4; Gm18872"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1185..1190
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Dpf3"
                     /gene_synonym="2810403B03Rik; 6530402L11Rik; BAF45C;
                     cer-d4; CERD4; Gm18872"
                     /note="hexamer: AATGAA"
     polyA_site      1214
                     /gene="Dpf3"
                     /gene_synonym="2810403B03Rik; 6530402L11Rik; BAF45C;
                     cer-d4; CERD4; Gm18872"
                     /note="major polyA site"
ORIGIN      
        1 agacaatatt ctgttacatt gtagcaaaat ggcgactgtc attcacaacc ccctgaaagc
       61 gcttggggac cagttctaca aggaagccat tgagcactgc cggagctaca actcgaggct
      121 gtgcgcagag cggagcgtgc gtctcccctt cctggactcg cagactgggg tggctcagaa
      181 caactgctac atctggatgg agaagaggca ccgcggccca ggcctcgctc cgggccagtt
      241 gtacacatac cctgcccgct gctggcgcaa gaagcgacga ttgcacccac cagaggaccc
      301 aaaactacga ctcctggaaa tcaaacccga agtagaactg cccctgaaga aagatggatt
      361 tacctctgag agtaccacac tggaagcctt gcttcgcggc gagggagtag agaagaaggt
      421 ggatgccaga gaagaggaaa gcatccagga gatacagagg gttttggaaa atgatgaaaa
      481 cgtagaagaa gggaatgaag aggaggattt ggaagaagat gttcccaagc gcaagaacag
      541 gaccagagga cgggctcgcg gctctgcagg cggaaggagg aggcatgatg ccgcctctca
      601 ggaagaccac gacaaaccct acgtctgcga catctgtggc aagcgctaca agaaccggcc
      661 aggactcagc taccactacg ctcatactca cctggccagc gaggagggag acgaagccca
      721 agaccaggag acccgatccc cacccaacca cagaaatgag aaccacagac cccagaaagg
      781 accagacggg acagtcattc ctaataacta ctgtgacttc tgcttggggg gctccaacat
      841 gaacaagaag agtgggaggc ctgaagagct ggtgtcctgt gcagactgtg gacgctctgc
      901 tcatttggga ggagaaggca ggaaggagaa ggaggcagcg gccgcagcac gtaccacgga
      961 ggacttattc ggttccacgt cagaaagtga cacctcaact ttctacggct ttgatgagga
     1021 cgatttggaa gagcctcgct cctgtcgagg acgccgcagt ggccggggtt cacccacagc
     1081 agataaaaag ggcagctgct gagcacatgg gacagactgt gtggccaatt agccacccct
     1141 ccccctgact ctggtcattg ttctagttct gatatatatt tttaaatgaa agacaacttg
     1201 ggcatttccc ttaatccttg ccttttcctt ctgcctccca cgtgtccctc cctctcctag
     1261 cttccttcta ttttgggtac aacagaagca cacactactg agaaccaggg aagagcagga
     1321 tgagagtcct ctggggagcc atggcatcat ggcgggctct tatggactct tatccctaga
     1381 agtaggagaa attaagagga ttttctgtca ctgggggagg gcatcttttt gatgtgagca
     1441 gagttgattt cctgttttca agagaagagg aacatgaggt ttgaaaacaa ataacattaa
     1501 caatatttat ttataaataa ctattattag atgcagatga ggagagagag agagagagag
     1561 agagagagag agagaggaga gagagagaga gaatggccac tgggtatgtg tgtgtggaga
     1621 acttcttcaa tgggagttgg tgactccaca gagcagactc ctccccatgt ctcctccaca
     1681 acctttccat cttcctgctt gtgtgaaatg gcaaccatcc cagagaagcc tggggccagt
     1741 tacagctggc ctccttccag cgctggccca gagcagcagt ggccgcttcc ctcggcccct
     1801 tttctcttcc cttgttgctg ggtttccctc actttcctcc tggcaaagat cagcttctga
     1861 aacacagaac ggaatgtcag caaatcacag acaggctcag ctctgacaga gcaaccgagg
     1921 ccggcgctcc tggaaggaag agtgatacta cacactgtat ctcccctccc tctgccccgg
     1981 tgtaagaaca tgtagccgcc cattggacga gaacgtcttc cagatttctt ctacttgtta
     2041 tagtgcctgc caggcacttt gttttatctt tccaatagca tttcctgaaa taaaccaaag
     2101 caacacttgg tccgaggcct cagggataga gaagactgtc ctcttcactg acagtccctg
     2161 agaacaggac agctgcgaga ccctgcagaa acaggtatgt cctggctgaa ctgtctcaca
     2221 acgagtgcaa aaccatcata atttttttcc tccttttttt ttcttttttt atttctttcc
     2281 tttggtttgt ctaagcttgc tcttttgtgt ttctgggttc cccctttgtg gtgctggggt
     2341 ggtgaatgag aatctgccct gttgtgcatg ctgggcctag gtgctgggct gatgatggct
     2401 tgggggggcg agggaagggg ctctatatag aatggcaagc tttttgactt ctggcttctg
     2461 gcttttggct ttaactgcaa gagagagtgg ctggggaaat gcttggctgc cttttcccgt
     2521 ggttaactgt ggaagtgaag tctgttggcc tgggtaggaa taaaagaggc agagaccatg
     2581 tactgcatgc ctagggtggt cttttgggct ctgaggacct gttttacagc caagggacct
     2641 agtctaaatc aaagatctct gggctggcaa gatggcttat tgggcaaggg tgcttgcagc
     2701 taagcttaat atcctgaatt tgacctgtgg tatccctaag gtggaaggaa agaactgact
     2761 cttgtaagtt gtcttctgat ttccatgtgt acaccctggt gtgtgtgtac acatacagac
     2821 acatgggagt attcatgagc acaggcacac atacacccac caaacaaaca ataaccacat
     2881 gaaagacctc tgaccaacat tcacctggac tgttgaagat tctgaattct cacaaagtat
     2941 ggccagggca gtgtgcttcc attagcacac attccaaggt ccttctggtc gcctagtcat
     3001 ctgattgctt gtaagtatca gaggagattg gttcctacag tccacatttt gttggtctcc
     3061 ctgaattaca tcactcataa actaacaagc taactcagca aaaggaaagg catacagaca
     3121 cacctaaaaa tggaagcttt tgagtgttcc tagtagccca agacaaagga ccatcttcct
     3181 cttctgtttc ataagaagca ggataagctg attcgaatgt ttgctctcag ttttgtgagg
     3241 ttgaacatga cactgccacc cactttgggg aagttctgct gaatctacat atgttcttct
     3301 tcctaaggaa tggtgcatag gcctcccatg tggtactgtt cccgcatgcg cacatgcagc
     3361 aactcagtag ggttctgtcc ttctgctact ttcagctctg tacttccttc ctttgattca
     3421 gatattgggt tcatagagtt atgactctca ctgatgaaat gtcatcttcc aggtcaataa
     3481 aaaggatatt cagtcta
//
