LOCUS       NM_001403205            2345 bp    mRNA    linear   ROD 03-SEP-2024
DEFINITION  Mus musculus double PHD fingers 1 (Dpf1), transcript variant 3,
            mRNA.
ACCESSION   NM_001403205 XM_006540032
VERSION     NM_001403205.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2345)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2345)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 2345)
  AUTHORS   Ji,S., Yang,Z., Gozali,L., Kenney,T., Kocabas,A., Jinsook Park,C.
            and Hynes,M.
  TITLE     Distinct expression of select and transcriptome-wide isolated
            3'UTRs suggests critical roles in development and transition states
  JOURNAL   PLoS One 16 (5), e0250669 (2021)
   PUBMED   33951080
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 2345)
  AUTHORS   Basta,J.M., Singh,A.P., Robbins,L., Stout,L., Pherson,M. and
            Rauchman,M.
  TITLE     The core SWI/SNF catalytic subunit Brg1 regulates nephron
            progenitor cell proliferation and differentiation
  JOURNAL   Dev Biol 464 (2), 176-187 (2020)
   PUBMED   32504627
REFERENCE   5  (bases 1 to 2345)
  AUTHORS   Elsen,G.E., Bedogni,F., Hodge,R.D., Bammler,T.K., MacDonald,J.W.,
            Lindtner,S., Rubenstein,J.L.R. and Hevner,R.F.
  TITLE     The Epigenetic Factor Landscape of Developing Neocortex Is
            Regulated by Transcription Factors Pax6--> Tbr2--> Tbr1
  JOURNAL   Front Neurosci 12, 571 (2018)
   PUBMED   30186101
  REMARK    Publication Status: Online-Only
REFERENCE   6  (bases 1 to 2345)
  AUTHORS   Battaglioli,E., Andres,M.E., Rose,D.W., Chenoweth,J.G.,
            Rosenfeld,M.G., Anderson,M.E. and Mandel,G.
  TITLE     REST repression of neuronal genes requires components of the
            hSWI.SNF complex
  JOURNAL   J Biol Chem 277 (43), 41038-41045 (2002)
   PUBMED   12192000
REFERENCE   7  (bases 1 to 2345)
  AUTHORS   Klochendler-Yeivin,A., Muchardt,C. and Yaniv,M.
  TITLE     SWI/SNF chromatin remodeling and cancer
  JOURNAL   Curr Opin Genet Dev 12 (1), 73-79 (2002)
   PUBMED   11790558
  REMARK    Review article
REFERENCE   8  (bases 1 to 2345)
  AUTHORS   Zhang,H.S., Gavin,M., Dahiya,A., Postigo,A.A., Ma,D., Luo,R.X.,
            Harbour,J.W. and Dean,D.C.
  TITLE     Exit from G1 and S phase of the cell cycle is regulated by
            repressor complexes containing HDAC-Rb-hSWI/SNF and Rb-hSWI/SNF
  JOURNAL   Cell 101 (1), 79-89 (2000)
   PUBMED   10778858
REFERENCE   9  (bases 1 to 2345)
  AUTHORS   Mertsalov,I.B., Kulikova,D.A., Alimova-Kost,M.V., Ninkina,N.N.,
            Korochkin,L.I. and Buchman,V.L.
  TITLE     Structure and expression of two members of the d4 gene family in
            mouse
  JOURNAL   Mamm Genome 11 (1), 72-74 (2000)
   PUBMED   10602997
REFERENCE   10 (bases 1 to 2345)
  AUTHORS   Phelan,M.L., Sif,S., Narlikar,G.J. and Kingston,R.E.
  TITLE     Reconstitution of a core chromatin remodeling complex from SWI/SNF
            subunits
  JOURNAL   Mol Cell 3 (2), 247-253 (1999)
   PUBMED   10078207
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC166079.2.
            
            On Mar 28, 2022 this sequence version replaced XM_006540032.4.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR10662773.604753.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384, SAMN01164131
                                           [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-143               AC166079.2         87349-87491
            144-304             AC166079.2         92790-92950
            305-412             AC166079.2         93024-93131
            413-540             AC166079.2         94644-94771
            541-630             AC166079.2         94986-95075
            631-709             AC166079.2         96227-96305
            710-841             AC166079.2         96461-96592
            842-892             AC166079.2         97518-97568
            893-1012            AC166079.2         97662-97781
            1013-1125           AC166079.2         99003-99115
            1126-1237           AC166079.2         99593-99704
            1238-2345           AC166079.2         99860-100967
FEATURES             Location/Qualifiers
     source          1..2345
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 16.94 cM"
     gene            1..2345
                     /gene="Dpf1"
                     /gene_synonym="Neud4"
                     /note="double PHD fingers 1"
                     /db_xref="GeneID:29861"
                     /db_xref="MGI:MGI:1352748"
     exon            1..143
                     /gene="Dpf1"
                     /gene_synonym="Neud4"
                     /inference="alignment:Splign:2.1.0"
     exon            144..304
                     /gene="Dpf1"
                     /gene_synonym="Neud4"
                     /inference="alignment:Splign:2.1.0"
     exon            305..412
                     /gene="Dpf1"
                     /gene_synonym="Neud4"
                     /inference="alignment:Splign:2.1.0"
     exon            413..540
                     /gene="Dpf1"
                     /gene_synonym="Neud4"
                     /inference="alignment:Splign:2.1.0"
     exon            541..630
                     /gene="Dpf1"
                     /gene_synonym="Neud4"
                     /inference="alignment:Splign:2.1.0"
     exon            631..709
                     /gene="Dpf1"
                     /gene_synonym="Neud4"
                     /inference="alignment:Splign:2.1.0"
     exon            710..841
                     /gene="Dpf1"
                     /gene_synonym="Neud4"
                     /inference="alignment:Splign:2.1.0"
     exon            842..892
                     /gene="Dpf1"
                     /gene_synonym="Neud4"
                     /inference="alignment:Splign:2.1.0"
     exon            893..1012
                     /gene="Dpf1"
                     /gene_synonym="Neud4"
                     /inference="alignment:Splign:2.1.0"
     exon            1013..1125
                     /gene="Dpf1"
                     /gene_synonym="Neud4"
                     /inference="alignment:Splign:2.1.0"
     exon            1126..1237
                     /gene="Dpf1"
                     /gene_synonym="Neud4"
                     /inference="alignment:Splign:2.1.0"
     exon            1238..2345
                     /gene="Dpf1"
                     /gene_synonym="Neud4"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2315..2320
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Dpf1"
                     /gene_synonym="Neud4"
                     /note="hexamer: ATTAAA"
     polyA_site      2345
                     /gene="Dpf1"
                     /gene_synonym="Neud4"
                     /note="major polyA site"
ORIGIN      
        1 gaaatcgtag cgcgctgggc ggcagagcgg gcggcgcagg ccgggctggg cccgcgctca
       61 gcggcagcag cagcggcgcc ccgggccgga ggcggcccag ccgagcgggc catggccacc
      121 gccattcaga acccgctcaa gtcccttggc gaggacttct accgggaggc catcgagcac
      181 tgtcgcagct acaacgcgcg cctgtgtgcc gagcgcagcc tgcgcctgcc tttcctcgac
      241 tcgcagaccg gagtggccca gaacaactgc tacatctgga tggagaagac ccaccgcggg
      301 cctggtttgg ccccgggaca gatctacact taccccgccc gctgttggag gaagaaacgg
      361 agactcaaca tcctggagga ccccaggctc cggccctgcg agtacaagat cgattgtgag
      421 gcacctctga agaaggaggg tggcctcccg gaagggccag tcctcgaggc tctgctgtgt
      481 gctgagactg gagagaagaa agtggagctg aaggaggagg agaccatcat ggactgtcag
      541 aaacagcagt tgctggagtt tccgcatgat ctcgaggtag aagacttgga ggaagacatt
      601 cccaggagga agaacagggc aagaggaaag gcatatggca ttggaggtct ccgcaaacgc
      661 caggacaccg catccctgga ggaccgagac aagccgtacg tctgtgatat ctgtgggaag
      721 agatataaga accggccagg actcagctac cattacaccc acacccacct ggctgaggag
      781 gagggggagg agcacactga acgccacgcc ctgcctttcc accggaaaaa caaccataaa
      841 cagttttaca aagaattggc ctgggtcccc gaggcacaga ggaaacacac agccaagaaa
      901 gcaccagatg gcactgtcat ccccaatggc tactgtgact tttgcctggg gggctccaag
      961 aagactgggt gtcccgagga cctcatctcc tgtgcggact gtgggcgatc aggacatccc
     1021 tcgtgtttac agttcacggt gaacatgacc gcggctgtgc ggacctaccg ctggcagtgc
     1081 attgaatgca agtcctgcag cctgtgtggc acctcggaga atgacggtgc cagctgggcg
     1141 ggtctcaccc cccaggacca gctgctgttc tgtgatgact gcgatcgagg ttaccacatg
     1201 tactgcctga gccctcccat ggcggagccc ccggaaggga gctggagctg ccacctctgt
     1261 ctccggcact tgaaggaaaa ggcctctgct tacatcaccc tgacctaggc ccggctctgc
     1321 ttccccagga tctttgggtg gtgctatctc ctgcctcttg gagctcctgg cgctccccac
     1381 ccggtgtccc cagtggaagg gatggggtga agcccagagt gggggggggc aaggtgttct
     1441 ccctctgcaa gtggaatgtt accctgtggg tggctgggtc caacagggtc cctcctgtcc
     1501 cccctcttca tcccttgaca aatgggcacc aggcttctgc tctcctcaaa gccatacccc
     1561 cgcctttggg cgggcataga ggggtagtgg atgctagcca gcagcacgga aagagccttt
     1621 ttctaaagaa aaagacaaaa cgtggaaaaa aaagggaaaa aaattaatat atacaaagag
     1681 tcctataaag cctggctggg tggagaggca ctgttgagtg tctgctgggg acctgacttt
     1741 accagtttcc tgaatggcgc ctccccacct catttctgga gttgcaatgg tctcaactcc
     1801 catctgaggt gggtaccacc ccttcctcag tacccaccgt ggatactgca tgtgaactat
     1861 ggttttgaac tcttcctcct cctccttgag agccccgccc tgcgcccgcg tggtgcctgc
     1921 ctgccaggcc tggggcgtgc agccggggag gcgggtgggg tgaggcaggc aggcagccag
     1981 ccccctgcag tgagaagcac agattgcaat ggactcagtt tttttttttt tttttttttt
     2041 ttttcctttc tcccttccca cccctttcct tccctaccca gccaggctgg gctgcctcct
     2101 gcccccctcg ctagccattt gggggtggca agggggtgtg gttgtttctc gtggttgtgt
     2161 gtgtttgttg ttcgggtttt taaaagggga aattgagact gcaagtgggg gaggtggagg
     2221 gtctggggga gtctgccccc aatccaggag tacccccctt gccaccaagt ctcctttatt
     2281 gcctgcctct gctgtgaatt aacttgttct gtgtattaaa ctgggcctga cccctctgcc
     2341 cacaa
//
