LOCUS       XM_011247238             956 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus deleted in primary ciliary dyskinesia
            (Dpcd), transcript variant X1, mRNA.
ACCESSION   XM_011247238
VERSION     XM_011247238.4
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000085.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_011247238.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..956
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="19"
     gene            1..956
                     /gene="Dpcd"
                     /gene_synonym="Gm17018; Ndac"
                     /note="deleted in primary ciliary dyskinesia; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 11 ESTs, 492 long SRA reads, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 27 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:226162"
                     /db_xref="MGI:MGI:1924407"
     CDS             231..770
                     /gene="Dpcd"
                     /gene_synonym="Gm17018; Ndac"
                     /codon_start=1
                     /product="protein DPCD isoform X1"
                     /protein_id="XP_011245540.1"
                     /db_xref="GeneID:226162"
                     /db_xref="MGI:MGI:1924407"
                     /translation="MVHYLFPDGKEMAEEYDEKTSELLVRKWRVKNALGALGQWQLEV
                     GEPVPSGAGSLGSELIKESNANPIFMRKDTKTSFQWRIRNLPYPKDVYSVSVAQKERC
                     VIVRTTNKKYYKKFSIPDLDRHQLPLEDSALSFAHANCTLIISYQKPKEVMAAESELQ
                     KELKKVKTAHGSAGDCKTQ"
ORIGIN      
        1 tgatcatcgg tcgggtagtt gccatggcag tggcccggcg cgttcctggg cggagggaag
       61 atggcggtga ctagctggtt ggaggttttg cggtcggccg agaagacggc actgctgcag
      121 gatgggctgt accaagaggc taattctgca ccccatttga ctgacgagga aactgaaacc
      181 caggaaggtt ttagaccaaa cccaggtttt gcagataatc agggaagagg atggtgcact
      241 atttgttccc agacgggaag gaaatggcag aagaatatga cgagaagacc agtgaactcc
      301 ttgtgaggaa gtggcgtgtg aaaaatgccc tgggagcctt gggccagtgg cagcttgaag
      361 tgggagagcc agtgccctca ggagctggga gcctgggatc cgagctcatc aaagaaagta
      421 atgccaatcc catcttcatg cgcaaggaca ccaaaacaag tttccagtgg cggattcgaa
      481 atctccccta cccgaaggat gtgtatagtg tgtctgtggc ccagaaggag cgctgcgtca
      541 ttgttagaac gacaaacaaa aagtactaca agaagttctc catccctgac ctagacagac
      601 accagcttcc tctagaggat tctgcgttga gctttgcgca cgccaactgc accctgataa
      661 tctcttatca gaagccaaag gaggtcatgg cggctgagtc agagttacag aaggagttaa
      721 agaaggtaaa gacggcccac ggcagtgctg gggactgtaa gacgcagtag ctgtcctgag
      781 ccttgcacct ccagtgagga ggaaactgtg agacttccgg cgtgggtttt atggcgcggg
      841 cagcctcttc tcttctaaga actacagagc ccctagaact ggctcgtggg gaacagcttg
      901 cttccacctg tggctctgtt cctgagtaaa gtcatttgca gttgctctag aaggac
//
