LOCUS       NM_026828               2936 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus DNL-type zinc finger (Dnlz), transcript variant 1,
            mRNA.
ACCESSION   NM_026828
VERSION     NM_026828.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2936)
  AUTHORS   Lin,Q., Donahue,S.L., Moore-Jarrett,T., Cao,S., Osipovich,A.B. and
            Ruley,H.E.
  TITLE     Mutagenesis of diploid mammalian genes by gene entrapment
  JOURNAL   Nucleic Acids Res 34 (20), e139 (2006)
   PUBMED   17062627
REFERENCE   2  (bases 1 to 2936)
  AUTHORS   Brady,K.P., Rowe,L.B., Her,H., Stevens,T.J., Eppig,J.,
            Sussman,D.J., Sikela,J. and Beier,D.R.
  TITLE     Genetic mapping of 262 loci derived from expressed sequences in a
            murine interspecific cross using single-strand conformational
            polymorphism analysis
  JOURNAL   Genome Res 7 (11), 1085-1093 (1997)
   PUBMED   9371744
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK142070.1 and BC031595.1.
            
            On Dec 25, 2008 this sequence version replaced NM_026828.2.
            
            Transcript Variant: This variant (1) encodes the longest isoform
            (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK142070.1, SRR1660811.989.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2725              AK142070.1         2-2726
            2726-2936           BC031595.1         2493-2703
FEATURES             Location/Qualifiers
     source          1..2936
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 18.87 cM"
     gene            1..2936
                     /gene="Dnlz"
                     /gene_synonym="1110034G11Rik; D2Bwg1335e; HEP1"
                     /note="DNL-type zinc finger"
                     /db_xref="GeneID:52838"
                     /db_xref="MGI:MGI:106559"
     exon            1..338
                     /gene="Dnlz"
                     /gene_synonym="1110034G11Rik; D2Bwg1335e; HEP1"
                     /inference="alignment:Splign:2.1.0"
     CDS             99..632
                     /gene="Dnlz"
                     /gene_synonym="1110034G11Rik; D2Bwg1335e; HEP1"
                     /note="isoform 1 is encoded by transcript variant 1;
                     DNL-type zinc finger protein; hsp70-escort protein 1;
                     mtHsp70-escort protein"
                     /codon_start=1
                     /product="DNL-type zinc finger protein isoform 1"
                     /protein_id="NP_081104.1"
                     /db_xref="CCDS:CCDS38083.1"
                     /db_xref="GeneID:52838"
                     /db_xref="MGI:MGI:106559"
                     /translation="MLRTALSRMPTLLRSVRTRDSGPRRLWDLGARLKTAERLRGWAW
                     GWASGWRSSSSAPGSGRAAALGRVEADHYQLVYTCKVCGTRSSKRISKLAYHQGVVIV
                     TCPGCQNHHIIADNLSWFSDLKGKRNIEEILAARGEEVRRVSGDGALELILEAAVPPD
                     TPEGDEDPPNPGKMGQS"
     exon            339..478
                     /gene="Dnlz"
                     /gene_synonym="1110034G11Rik; D2Bwg1335e; HEP1"
                     /inference="alignment:Splign:2.1.0"
     exon            479..2919
                     /gene="Dnlz"
                     /gene_synonym="1110034G11Rik; D2Bwg1335e; HEP1"
                     /inference="alignment:Splign:2.1.0"
     regulatory      722..727
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Dnlz"
                     /gene_synonym="1110034G11Rik; D2Bwg1335e; HEP1"
                     /note="hexamer: AGTAAA"
     polyA_site      742
                     /gene="Dnlz"
                     /gene_synonym="1110034G11Rik; D2Bwg1335e; HEP1"
                     /note="major polyA site"
     regulatory      2894..2899
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Dnlz"
                     /gene_synonym="1110034G11Rik; D2Bwg1335e; HEP1"
                     /note="hexamer: AATAAA"
     polyA_site      2916
                     /gene="Dnlz"
                     /gene_synonym="1110034G11Rik; D2Bwg1335e; HEP1"
ORIGIN      
        1 gaagagggcc gcttccggcc gctgcgcccg ttaccaaaat ggtcgacgca gcttcacggg
       61 gcggtgcaag aaaaggtggc taaggattcg caggcgggat gttgcggaca gcgctgagcc
      121 gcatgccgac actacttcgt agtgtgcgga cccgggattc cggaccgcgg cggctttggg
      181 atttgggggc tcgcctaaag accgcggaga gacttcgggg ctgggcctgg ggctgggcct
      241 cgggctggcg gagctcgagc tccgcgccgg gatcagggcg tgcggcggcg ctggggcgcg
      301 tggaagcgga ccactatcaa ctcgtctaca cctgcaaggt ctgtgggact cggtcatcca
      361 agcgcatctc aaagttggcc tatcaccagg gcgtggtcat cgtgacttgc cctggttgcc
      421 agaaccacca catcatcgca gacaacctaa gctggttctc tgacctgaag gggaagagga
      481 atattgaaga gatcctagca gccagaggag aggaggtacg ccgagtgtct ggtgacggtg
      541 ccctggaact gattctggag gctgctgtac cccctgacac cccagaaggg gatgaggatc
      601 cccccaaccc tggcaagatg ggacagagct gatctgcata ctcctacagc tgcagactcc
      661 agtcttccca aaagtcgctc ccttcacttg gagcctcaca agcctgctgc tgttccttgt
      721 cagtaaaaag ccatcacctc caggcaccgg gcctgggctc ctgtttttct cttgtgaagt
      781 cagaacaact ctgtggctgt aggagcccag cctcatgccc acccatgata gccacagtgg
      841 tggcttcggg ggtggctttg tcccagtgca gtcggtctcc ttcttaagta gggctggatc
      901 tggtcttgag ttaggctcgt ggcctcaggt ggttttttgt tcctcagagc tctttacttc
      961 ttccttctat atgacctgcc tccaccccca ccccaccccc agccctggtg gcttctgttg
     1021 ttgagctagt gtccagccca gccctgaggt ttggtttctg tagcagaact ggctgctctg
     1081 ggtggccgcc gaggagcaga gcgctgctca gaggcttagg ggagtgatcc aggcagaggc
     1141 acaccacaca cacacacaca cacacacaca cacacacaca ccacaccacc catgagctgc
     1201 ctgcacctct caatcctcct gtcttgaggt ccaagaggag atgcatggaa gtgatgaggg
     1261 ccgtatcatg cttgccttgt gtgtgcttca tctcctaact tggtttgaca tgcctttggg
     1321 atagtcttgt gtttaggaag tcaagcagat gcacaaacag gctttttgtg ggagtttctg
     1381 ggccctgtga ccttcaacat ctggcagggg ggatcctggg acagggggtg gagaaggcag
     1441 ttgacacgga cacaatgctt ccctggctcc tgggacccca gctagtgatt agcagttcac
     1501 tctgggccct gggaggccgg gtgcacttgc agtctgtgcc ttccctcgat taccccctgt
     1561 ccttccctca gcaaacaccc tgctattatc cccaccctag cctcctgtgc catttgtaca
     1621 aactgtcaca tcctggagga agagccagcc tccgactcca gcctgctccc tgtggaggac
     1681 accgaggtca gaggagccga ttgccttgct tgtgggcctt caagtcagga accagtggag
     1741 cctggctggg ctgcctcgtc ctcaggtgtc tgggccagag ttgtcggagg cctggggctg
     1801 gctagacctg acagtacaga gctggatcta gcgtatctcc tctagatggg aagcccatga
     1861 tttggactta cctcctgtgt gtgtgtgcct tctgcctgtt gctgctccag agcctccttc
     1921 ccagggaggg tctcctgtgc atcaggattt cacttgaagc ttcactttcc acatagtcca
     1981 ttcttgcaga gtccatacct caccgtgttc tgcagactca ccacgggcca cagttcccaa
     2041 tcatgtggcc aggttcctga cagcctggaa ttgttctgac tagtttagtt ctccattcct
     2101 tcctcccttt cagtggagac taagtaaagt accaccccaa catcacagca cctcttggcc
     2161 agaccagcgt gactcctgtg gggtggcttg gctctctcaa tacatcccct tcccatggca
     2221 gccatctctg gcagctggcc tcccggcacc tgagcaattt cagcctgccc agaagcgtgg
     2281 ctgcctctag agcaaccaca gtgctctaga cgatagagaa ttctctaggc tattttactg
     2341 gtcttagcta tgttctgcta cccttggccc atcaggacac tccccaaagg gcccaatcag
     2401 gatctgagtt acatggggtg ctgcccacta catgaacatt gaagacaagt tcctctgtgg
     2461 cttagattgg cataatccag cgcttgtaat gggaactgct aagacatagg aagctctggg
     2521 gctgggtcca atccagtcgg gggcggggag gctgcttgga agggctagtc ctgagtgttt
     2581 accaatgtac tgtgacatcc ctggcttctg tttcctgtct ctggaaagtc agcataatgg
     2641 agaacagcag agaaagcagc agtagcggct ctggccccgc ctctcactgt cgcatgcagc
     2701 agagacatgc tgcatgatct caggggcctt gtacactgca ctgggtaagc caataccatg
     2761 tcctgggaag gctgacacaa attccaacag aagccacact cacttggcag acttttattt
     2821 ttgggtaaaa caaaacaaat gtacctctcg ggtcagaaag gacccatgaa caacatggca
     2881 aacacatgta agcaataaat acgcatgtac attcaagtaa aaaaaaaaaa aaaaaa
//
