LOCUS       NM_177677               1563 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus DnaJ heat shock protein family (Hsp40) member C5 gamma
            (Dnajc5g), transcript variant 1, mRNA.
ACCESSION   NM_177677
VERSION     NM_177677.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1563)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1563)
  AUTHORS   Sundberg,J.P., Dadras,S.S., Silva,K.A., Kennedy,V.E., Garland,G.,
            Murray,S.A., Sundberg,B.A., Schofield,P.N. and Pratt,C.H.
  TITLE     Systematic screening for skin, hair, and nail abnormalities in a
            large-scale knockout mouse program
  JOURNAL   PLoS One 12 (7), e0180682 (2017)
   PUBMED   28700664
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1563)
  AUTHORS   Dickinson,M.E., Flenniken,A.M., Ji,X., Teboul,L., Wong,M.D.,
            White,J.K., Meehan,T.F., Weninger,W.J., Westerberg,H., Adissu,H.,
            Baker,C.N., Bower,L., Brown,J.M., Caddle,L.B., Chiani,F., Clary,D.,
            Cleak,J., Daly,M.J., Denegre,J.M., Doe,B., Dolan,M.E., Edie,S.M.,
            Fuchs,H., Gailus-Durner,V., Galli,A., Gambadoro,A., Gallegos,J.,
            Guo,S., Horner,N.R., Hsu,C.W., Johnson,S.J., Kalaga,S., Keith,L.C.,
            Lanoue,L., Lawson,T.N., Lek,M., Mark,M., Marschall,S., Mason,J.,
            McElwee,M.L., Newbigging,S., Nutter,L.M., Peterson,K.A.,
            Ramirez-Solis,R., Rowland,D.J., Ryder,E., Samocha,K.E.,
            Seavitt,J.R., Selloum,M., Szoke-Kovacs,Z., Tamura,M., Trainor,A.G.,
            Tudose,I., Wakana,S., Warren,J., Wendling,O., West,D.B., Wong,L.,
            Yoshiki,A., MacArthur,D.G., Tocchini-Valentini,G.P., Gao,X.,
            Flicek,P., Bradley,A., Skarnes,W.C., Justice,M.J., Parkinson,H.E.,
            Moore,M., Wells,S., Braun,R.E., Svenson,K.L., de Angelis,M.H.,
            Herault,Y., Mohun,T., Mallon,A.M., Henkelman,R.M., Brown,S.D.,
            Adams,D.J., Lloyd,K.C., McKerlie,C., Beaudet,A.L., Bucan,M. and
            Murray,S.A.
  CONSRTM   International Mouse Phenotyping Consortium; Jackson Laboratory;
            Infrastructure Nationale PHENOMIN, Institut Clinique de la Souris
            (ICS); Charles River Laboratories; MRC Harwell; Toronto Centre for
            Phenogenomics; Wellcome Trust Sanger Institute; RIKEN BioResource
            Center
  TITLE     High-throughput discovery of novel developmental phenotypes
  JOURNAL   Nature 537 (7621), 508-514 (2016)
   PUBMED   27626380
  REMARK    Erratum:[Nature. 2017 Nov 16;551(7680):398. PMID: 29144450]
REFERENCE   4  (bases 1 to 1563)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK076638.1.
            
            On Apr 6, 2007 this sequence version replaced NM_177677.2.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK076638.1, BC089502.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384, SAMN01164134
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1563              AK076638.1         2-1564
FEATURES             Location/Qualifiers
     source          1..1563
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 17.03 cM"
     gene            1..1563
                     /gene="Dnajc5g"
                     /gene_synonym="4922503E23Rik"
                     /note="DnaJ heat shock protein family (Hsp40) member C5
                     gamma"
                     /db_xref="GeneID:231098"
                     /db_xref="MGI:MGI:3045263"
     exon            1..103
                     /gene="Dnajc5g"
                     /gene_synonym="4922503E23Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            104..219
                     /gene="Dnajc5g"
                     /gene_synonym="4922503E23Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             107..604
                     /gene="Dnajc5g"
                     /gene_synonym="4922503E23Rik"
                     /note="isoform 1 is encoded by transcript variant 1; DnaJ
                     (Hsp40) homolog, subfamily C, member 5 gamma"
                     /codon_start=1
                     /product="dnaJ homolog subfamily C member 5G isoform 1"
                     /protein_id="NP_808345.1"
                     /db_xref="CCDS:CCDS19172.1"
                     /db_xref="GeneID:231098"
                     /db_xref="MGI:MGI:3045263"
                     /translation="MPLTYDATQRLSRTGKSLYAVLELKKGAETADIKKAYRKLALQY
                     HPDKNPDNPLAAEIFKEINTAHAILTDPTKKKIYDRHGSLGLYLYDHFGEEGVRFYFI
                     VNSCWFKTLVILCCLLTGCCCCCCCCLCCGRLNPSAEEEEENRQMNVSSQPSRSRTQD
                     IEAED"
     exon            220..433
                     /gene="Dnajc5g"
                     /gene_synonym="4922503E23Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            434..575
                     /gene="Dnajc5g"
                     /gene_synonym="4922503E23Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            576..642
                     /gene="Dnajc5g"
                     /gene_synonym="4922503E23Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            643..1563
                     /gene="Dnajc5g"
                     /gene_synonym="4922503E23Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1544..1549
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Dnajc5g"
                     /gene_synonym="4922503E23Rik"
                     /note="putative"
     polyA_site      1563
                     /gene="Dnajc5g"
                     /gene_synonym="4922503E23Rik"
                     /note="putative"
ORIGIN      
        1 gcaagcgcag tttccatagc ccagaggcaa tatgaaagtt cacgtctacc gggaagaagg
       61 aagcttgtgt caggcctacc tggttttata gaacaattct gagagcatgc ctcttacgta
      121 tgacgcaacc cagcgactat ctagaactgg gaaaagcctc tatgcagtgc tggaactgaa
      181 gaagggtgct gagactgcag acatcaaaaa agcctacagg aaactggcct tgcaatatca
      241 tccagacaag aatccagata accctttagc agcagaaatc ttcaaagaga tcaacacagc
      301 ccatgccata ctcaccgacc ctacaaaaaa gaagatctat gaccggcacg gctcactagg
      361 attatacctg tatgaccatt ttggtgaaga aggtgtccga ttctatttta tagtgaacag
      421 ttgttggttc aagacacttg ttatcctttg ttgcttgctc actggttgtt gttgttgctg
      481 ctgctgctgt ttatgctgtg gtagacttaa tccatcagcc gaggaagagg aagagaatcg
      541 ccaaatgaat gtttcttctc agccttcaag atcaagaaca caagatattg aagcagagga
      601 ttaagacgtg acaataatta aggaaacgtg aagaggaatg gggtgctggc ccagcaagag
      661 tccccgacac tcagcccact ggatacattg aagaaggaag aaagtagccc tgtctctaca
      721 ctcacccaga tttgactcct gttcttaaaa gaaatccctg ctgcttcaga agctatgatg
      781 acacccatcc tcgtaaggac atctctgccc tccacagtga cacaaagcct gtccccaaag
      841 aaccttccag ctgcttttct gtttagctct gactccattc ctgtctttat ccacatgcgc
      901 tctcaagacg tgttggcagc tgtttgctga gtgggtgcag ctttctccag tgggtacctg
      961 ggtcaatgtc cagtaggccc ctgagcactt actaacaagt tcaccaggat cctgatcacc
     1021 aaacaaggtg gctcccatcc caggagctgt tgcaccaatt agtcctcctt cgttggaaca
     1081 ctgtgtacca agaactttta gcaccagctt catttctttg caacaccttt ggaagactgg
     1141 tctcaccatc ttctggttcc tacaccactg gcaccaacac cccatttata agacagcttg
     1201 ggaaacttgt gtttgtggcg acccttgaac ttcagctcca tccttaaacc cattattagc
     1261 cgtggtcctg tggacaggct gcagtccatg ctccaatctt actgcctctg tccctcatgt
     1321 tacttcacac agagtgatcc ccttagatct tatttcttaa cacagacatg aaatgtgatg
     1381 ggacagactg tatgaaggag acctcattta gcctctcgaa gctgttggct tagcatcctc
     1441 tctgtatccc gctttattgt ttctttctta ctatgtggta tcagggccca ggaaccatca
     1501 aacctctctc tattcactgg gaaaaaggct aaggaatgtc aataataaaa aagagctttg
     1561 tcc
//
