LOCUS       NM_001357001             877 bp    mRNA    linear   ROD 05-JUN-2024
DEFINITION  Mus musculus DnaJ heat shock protein family (Hsp40) member C4
            (Dnajc4), transcript variant 3, mRNA.
ACCESSION   NM_001357001
VERSION     NM_001357001.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 877)
  AUTHORS   Ohtsuka,K. and Hata,M.
  TITLE     Mammalian HSP40/DNAJ homologs: cloning of novel cDNAs and a
            proposal for their classification and nomenclature
  JOURNAL   Cell Stress Chaperones 5 (2), 98-112 (2000)
   PUBMED   11147971
REFERENCE   2  (bases 1 to 877)
  AUTHORS   Silins,G., Grimmond,S. and Hayward,N.
  TITLE     Characterisation of a new human and murine member of the DnaJ
            family of proteins
  JOURNAL   Biochem Biophys Res Commun 243 (1), 273-276 (1998)
   PUBMED   9473517
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC120557.12.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR5189673.220614.1, BI410906.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-34                AC120557.12        6396-6429
            35-148              AC120557.12        6706-6819
            149-242             AC120557.12        8167-8260
            243-427             AC120557.12        9113-9297
            428-592             AC120557.12        9391-9555
            593-679             AC120557.12        10703-10789
            680-877             AC120557.12        10870-11067
FEATURES             Location/Qualifiers
     source          1..877
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="19"
                     /map="19 5.13 cM"
     gene            1..877
                     /gene="Dnajc4"
                     /gene_synonym="Hspf2; Mcg18"
                     /note="DnaJ heat shock protein family (Hsp40) member C4"
                     /db_xref="GeneID:57431"
                     /db_xref="MGI:MGI:1927346"
     exon            1..34
                     /gene="Dnajc4"
                     /gene_synonym="Hspf2; Mcg18"
                     /inference="alignment:Splign:2.1.0"
     exon            35..148
                     /gene="Dnajc4"
                     /gene_synonym="Hspf2; Mcg18"
                     /inference="alignment:Splign:2.1.0"
     CDS             54..791
                     /gene="Dnajc4"
                     /gene_synonym="Hspf2; Mcg18"
                     /note="isoform b is encoded by transcript variant 3;
                     multiple endocrine neoplasia type 1 candidate protein 18;
                     dnaJ homolog subfamily C member 4; multiple endocrine
                     neoplasia type 1 candidate protein number 18 homolog; heat
                     shock 40kD protein 2; DnaJ (Hsp40) homolog, subfamily C,
                     member 4"
                     /codon_start=1
                     /product="dnaJ homolog subfamily C member 4 isoform b"
                     /protein_id="NP_001343930.1"
                     /db_xref="GeneID:57431"
                     /db_xref="MGI:MGI:1927346"
                     /translation="MPSLLLQLPLRLCRLWPHSLSIRLLTAATGQRSVPTNYYELLGV
                     HPGASAEEIKRAFFTKSKELHPDRDPGNPALHSRFVELNEAYRVLSREESRRNYDHQL
                     HSASPPKSSGSTAEPKYTQQTHSSSWEPPNAQYWAQFHSVRPQGPESRKQQRKHNQRV
                     LGYCLLLMVAGMGLHYVAFRKLEQVHRSFMDEKDRIITAIYNDTRARARANRARIQQE
                     RQQRQQPRAEPSLPPESSRIMPQDTSP"
     exon            149..242
                     /gene="Dnajc4"
                     /gene_synonym="Hspf2; Mcg18"
                     /inference="alignment:Splign:2.1.0"
     exon            243..427
                     /gene="Dnajc4"
                     /gene_synonym="Hspf2; Mcg18"
                     /inference="alignment:Splign:2.1.0"
     exon            428..592
                     /gene="Dnajc4"
                     /gene_synonym="Hspf2; Mcg18"
                     /inference="alignment:Splign:2.1.0"
     exon            593..679
                     /gene="Dnajc4"
                     /gene_synonym="Hspf2; Mcg18"
                     /inference="alignment:Splign:2.1.0"
     exon            680..877
                     /gene="Dnajc4"
                     /gene_synonym="Hspf2; Mcg18"
                     /inference="alignment:Splign:2.1.0"
     regulatory      856..861
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Dnajc4"
                     /gene_synonym="Hspf2; Mcg18"
                     /note="hexamer: AATAAA"
     polyA_site      877
                     /gene="Dnajc4"
                     /gene_synonym="Hspf2; Mcg18"
                     /note="major polyA site"
ORIGIN      
        1 ataggcgcag gaaatggcgg cgaccaagga gcctctgcct gcccgtcgtc gtcatgccgt
       61 ccctgttgct ccagctgccc ctgcgcctat gccggctgtg gccgcatagc ctttccatcc
      121 gacttctcac agccgccaca gggcagcggt ctgtccctac taattactat gaattgttgg
      181 gcgtgcatcc gggtgccagc gctgaagaga ttaaacgtgc ttttttcacc aagtcaaaag
      241 agctacaccc tgatcgagac cctgggaacc cagccctgca tagccgcttt gtggagctga
      301 atgaggcata tcgagtgctc agtcgtgagg aaagtcgtcg taactatgac caccagctgc
      361 attcagccag tcctccaaag tcttcaggga gcacagccga gcctaagtat acgcaacaga
      421 cacacagcag ctcctgggaa ccccccaacg ctcaatactg ggcccagttc cacagtgtga
      481 ggccgcaggg gccggagtca aggaagcagc agcgtaaaca caaccagcgg gtcctggggt
      541 actgcctcct gctcatggtg gcaggcatgg gcctgcacta tgttgccttc aggaagctgg
      601 agcaggtgca tcgcagcttc atggatgaaa aggaccggat cattacagcc atctacaatg
      661 acactcgggc cagggccagg gccaacagag ccaggattca gcaggagcgc cagcagaggc
      721 agcagcctcg ggcagaaccc tccctgcctc cagaaagctc caggatcatg ccccaggaca
      781 caagcccctg agaggcttaa ctaaatggga ccttcattgg tcctctccct gctgcctgtc
      841 cagaactaca cgtgcaataa actcattttc agacgcc
//
