LOCUS       NM_138664               3365 bp    mRNA    linear   ROD 29-JUL-2024
DEFINITION  Mus musculus DnaJ heat shock protein family (Hsp40) member C28
            (Dnajc28), transcript variant 2, mRNA.
ACCESSION   NM_138664
VERSION     NM_138664.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3365)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 3365)
  AUTHORS   Dickinson,M.E., Flenniken,A.M., Ji,X., Teboul,L., Wong,M.D.,
            White,J.K., Meehan,T.F., Weninger,W.J., Westerberg,H., Adissu,H.,
            Baker,C.N., Bower,L., Brown,J.M., Caddle,L.B., Chiani,F., Clary,D.,
            Cleak,J., Daly,M.J., Denegre,J.M., Doe,B., Dolan,M.E., Edie,S.M.,
            Fuchs,H., Gailus-Durner,V., Galli,A., Gambadoro,A., Gallegos,J.,
            Guo,S., Horner,N.R., Hsu,C.W., Johnson,S.J., Kalaga,S., Keith,L.C.,
            Lanoue,L., Lawson,T.N., Lek,M., Mark,M., Marschall,S., Mason,J.,
            McElwee,M.L., Newbigging,S., Nutter,L.M., Peterson,K.A.,
            Ramirez-Solis,R., Rowland,D.J., Ryder,E., Samocha,K.E.,
            Seavitt,J.R., Selloum,M., Szoke-Kovacs,Z., Tamura,M., Trainor,A.G.,
            Tudose,I., Wakana,S., Warren,J., Wendling,O., West,D.B., Wong,L.,
            Yoshiki,A., MacArthur,D.G., Tocchini-Valentini,G.P., Gao,X.,
            Flicek,P., Bradley,A., Skarnes,W.C., Justice,M.J., Parkinson,H.E.,
            Moore,M., Wells,S., Braun,R.E., Svenson,K.L., de Angelis,M.H.,
            Herault,Y., Mohun,T., Mallon,A.M., Henkelman,R.M., Brown,S.D.,
            Adams,D.J., Lloyd,K.C., McKerlie,C., Beaudet,A.L., Bucan,M. and
            Murray,S.A.
  CONSRTM   International Mouse Phenotyping Consortium; Jackson Laboratory;
            Infrastructure Nationale PHENOMIN, Institut Clinique de la Souris
            (ICS); Charles River Laboratories; MRC Harwell; Toronto Centre for
            Phenogenomics; Wellcome Trust Sanger Institute; RIKEN BioResource
            Center
  TITLE     High-throughput discovery of novel developmental phenotypes
  JOURNAL   Nature 537 (7621), 508-514 (2016)
   PUBMED   27626380
  REMARK    Erratum:[Nature. 2017 Nov 16;551(7680):398. doi:
            10.1038/nature24643. PMID: 29144450]
REFERENCE   3  (bases 1 to 3365)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
REFERENCE   4  (bases 1 to 3365)
  AUTHORS   Gitton,Y., Dahmane,N., Baik,S., Ruiz i Altaba,A., Neidhardt,L.,
            Scholze,M., Herrmann,B.G., Kahlem,P., Benkahla,A., Schrinner,S.,
            Yildirimman,R., Herwig,R., Lehrach,H. and Yaspo,M.L.
  CONSRTM   HSA21 expression map initiative
  TITLE     A gene expression map of human chromosome 21 orthologues in the
            mouse
  JOURNAL   Nature 420 (6915), 586-590 (2002)
   PUBMED   12466855
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BB622009.1, AK081175.1, BB535506.2, AC131691.4 and AV328433.2.
            
            On Jul 24, 2007 this sequence version replaced NM_138664.1.
            
            Transcript Variant: This variant (2) differs in the 5' UTR and
            initiates translation at a downstream AUG, compared to variant 1.
            The resulting protein (isoform 2) is shorter at the N-terminus,
            compared to isoform 1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BB622009.1, SRR1660819.72666.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384, SAMN01164131
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-5                 BB622009.1         1-5
            6-1409              AK081175.1         2-1405
            1410-1885           BB535506.2         175-650
            1886-2742           AC131691.4         58010-58866         c
            2743-3365           AV328433.2         2-624
FEATURES             Location/Qualifiers
     source          1..3365
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="16"
                     /map="16 53.17 cM"
     gene            1..3365
                     /gene="Dnajc28"
                     /gene_synonym="ORF28"
                     /note="DnaJ heat shock protein family (Hsp40) member C28"
                     /db_xref="GeneID:246738"
                     /db_xref="MGI:MGI:2181053"
     exon            1..242
                     /gene="Dnajc28"
                     /gene_synonym="ORF28"
                     /inference="alignment:Splign:2.1.0"
     exon            243..3365
                     /gene="Dnajc28"
                     /gene_synonym="ORF28"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3348..3353
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Dnajc28"
                     /gene_synonym="ORF28"
ORIGIN      
        1 ccggcacaac aacaagcgtc caggggagtc tgtcctctgt tccgtggggg atggttttat
       61 aagaaagaga tcgctgtccc tggtgaggga aactacctgt cgtagtaagg tatgaagaaa
      121 ggctctgcag tgtagcgcgg cagagggtcc agtagccgag acagggacgg agcgggccac
      181 gcgtgctgcg caaaggcgca gcttgagctt cgagccgctg aacccccatc acgtctgtga
      241 agatcactgt taagaattcc agatacaatg ataaacacag tgtgcatgaa gaccactcgg
      301 atcttgagac tgcacctaac aaacgcttcc ttgattcctc ctggtataaa aatgctttca
      361 gaccccagat ccaggatgat atcaacccat gaatcccaga agctgagaga atattacagg
      421 ctgctgaatc tggatgaagg atgctctgta gacgacgtca gggagtcttt tcacaagctc
      481 gccaggcagt accacccaga cagcggttct agtgatgctg actctgcaac atttataaag
      541 attgaagagg cttacaggaa tgtgctgtcc catgcgataa aacggatgca tgccggacag
      601 gataaagctg aagatgcagc agaagatgaa gaagaaggaa agttcaaata caacacacct
      661 cagcaccgac attacttaag cttcgaaggt gtcggctttg ggacccccag ccagcgagag
      721 aaacaataca ggcagttcag ggcggatcgc gcgacggagc aggtgatgga ataccaaagg
      781 cagaagcttc agagggagtt cttcgccaac agcataactg tcaaggacgt acggcagagc
      841 aagcaacaga agataactca agccatcgag cgcctggtgg aggacctcat tcaggaatcc
      901 atggcaaaag gagactttga caatctcagc gggaaaggaa aaccgctgaa gaaattttct
      961 ggctgctcat atattgatcc catgactcac aacctgaacc gaatattgat agataatgga
     1021 taccaaccag agtggatcct gatgcagaag gagattaagg acaccatcga gcaactccga
     1081 gaagcgcttt taatgtctag gaagaagctg gggaaccctc tgtcacccac agagcagaaa
     1141 cagtgggccc aagtgtgtga gcagtttcaa gaaaagatac gaaagctgaa caagcgaatt
     1201 aatgatttca acttaattgt tcccatcctg accaggcaga aagtccattt tgacgcacag
     1261 aaagaaatta tcagagtcca agaaatgtac ggggccttcg tagaagcaaa cgaagtcaca
     1321 gaagaaaacc aaactgacgt tagccaggga gaagaatcaa aaacacccag agtcaaggca
     1381 ggctttctaa actggctaaa tctgtggaaa tctattaaaa tatgactgtt ttgttattca
     1441 cgatcatttt ccactctggt cagttttgag ttgctctgac gtcagacgca gaacctaaga
     1501 ttgactgtcg tgccccaggg gcctgagaag tgtgtgcctt tgtagttttc acagaactaa
     1561 tcacaccccg gtggtagatg agaaacttgg gtgagttctg ctgtaatgat gtagtaagag
     1621 gcagaccctg cccctgaagg agcaggctcc ggcgccagac ttcaggtatc ggcctctagg
     1681 actgaagcac agacccgagg cccacatagg gccttccaga aacctcagag ctctctgaga
     1741 cactagcaac ttataggtag gtagtcgctg tttgactttt ctaaccataa ggacttaagc
     1801 agcaatgaaa ccaaaaggta tagaactgaa gaagttgtaa tgagatttaa ccaactgtgg
     1861 tctccaaatg aaaattcaaa acctcaaaag aacaaaggaa ggaaggaagg aaggagatat
     1921 gaaaggaaat gaaaaagaaa ggggctggag aaactgccca gagggtgaga gtctttgctc
     1981 tttgctgctc ctgcagagga ccagcatcct agtcaggtgg ctcacaactg cctgtaactc
     2041 cagctccagg gatccagtgt gcacacacac atgtgcacac atacgcatgt gcacacacat
     2101 gtaacaaatt aaagatctcc agacaacagg tagtttttgc aggtttcctc tggtatattc
     2161 cagagcttat taaagctcta aaactgtggg aaggcttttc aaacacctgc taggtgctct
     2221 aaaactgaaa gtcaggaaaa aatagacttc tggggctcct gtatttacaa aggccttccc
     2281 tgtgggcact ggacaaagaa aagggcaagt aggtaggcta actgtgaccc actggccaca
     2341 gaagtcagtt aaactgattg atttagaagt tctgaaaatg ttaaagttga ttatattttt
     2401 gtaacttttg gagggggcaa aaatccttaa gaacaataca aaggtaaaag ttcactagca
     2461 gtttcttctc tggtcaccag ctatacaaag gtaaaagttc actagttagt agtttcttct
     2521 ctggtcacca gctatacaaa ggtaaaagtt cactagttag tagtttcttc tctggtcacc
     2581 agctatacaa aggtaaaagt tcactagtta gtagtttctt ctctggtcac cagctatatt
     2641 gtaggttccc ataaaccttg cttaagtgcc atggtgtcct agagcagact ccccagagat
     2701 ggttcaacaa tgttaacccc caacttatcc ctctttggaa cacaacaaag agaccctttg
     2761 gcagtttgtc taagatgagg tatctgaaat atgttccttg gcatcttcgg tgagtctcct
     2821 ttcagaaaac ccggggctct caggcttggc taattgcttt gggcacagaa tcgggtcccc
     2881 agaaggaagc caaagtgtgc agaaaggagc tgacctattt ccagagcaga gtggagatgg
     2941 gtttcagaac agctcctgac acggacatgg ggccgagtca ttgtgtaaag tctgcagtgg
     3001 tcaaaacatc aaagaagcca acatcctcaa aagaaagttg ggccctttct gctttgacga
     3061 tggggcaatt ggttgacata atgagtaatt ttttgttgtt ggaatgagtt atctgatagt
     3121 actatatgta ttactaaagg aaactgtcag cagcgtggag tatggctttg tgctaagagc
     3181 tctggctccc gatcactgta agagcctggt attctgtgat gcttgcttta aaactgagag
     3241 tctggagtga acatggagtg gaagaatctt cagtgttata catgagaggg tgaggtcacc
     3301 aaaactattc attagtacca ttcacttgat ctgcagatat ctatattaat aaaattacct
     3361 taatg
//
