LOCUS       NM_029669               5169 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus DnaJ heat shock protein family (Hsp40) member C18
            (Dnajc18), mRNA.
ACCESSION   NM_029669
VERSION     NM_029669.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 5169)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 5169)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
REFERENCE   3  (bases 1 to 5169)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC132837.11 and AC121821.3.
            
            On Mar 1, 2008 this sequence version replaced NM_029669.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR9219382.226895.1,
                                           SRR9219381.160860.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-119               AC132837.11        34530-34648         c
            120-306             AC132837.11        32308-32494         c
            307-452             AC132837.11        28482-28627         c
            453-638             AC132837.11        18172-18357         c
            639-745             AC121821.3         173796-173902       c
            746-855             AC121821.3         172498-172607       c
            856-1028            AC121821.3         171344-171516       c
            1029-5169           AC121821.3         161681-165821       c
FEATURES             Location/Qualifiers
     source          1..5169
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="18"
                     /map="18 19.21 cM"
     gene            1..5169
                     /gene="Dnajc18"
                     /gene_synonym="2700075B01Rik"
                     /note="DnaJ heat shock protein family (Hsp40) member C18"
                     /db_xref="GeneID:76594"
                     /db_xref="MGI:MGI:1923844"
     exon            1..119
                     /gene="Dnajc18"
                     /gene_synonym="2700075B01Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             80..1153
                     /gene="Dnajc18"
                     /gene_synonym="2700075B01Rik"
                     /note="DnaJ (Hsp40) homolog, subfamily C, member 18"
                     /codon_start=1
                     /product="dnaJ homolog subfamily C member 18"
                     /protein_id="NP_083945.1"
                     /db_xref="CCDS:CCDS29148.1"
                     /db_xref="GeneID:76594"
                     /db_xref="MGI:MGI:1923844"
                     /translation="MATTLGSGERWTQAYIDAIRRNKYPEDKRPDSHDPCGCCNCMKA
                     QKEKKSENEWNQTRQGEGNATYTEEQLRGVQRIKKCRNYYDILGVSHNASDEELKKAY
                     KKLALKFHPDKNCAPGATEAFKAIGNAFAVLSNPDKRLRYDEYGDEQVTFTVPRARSY
                     HYYKDFEADISPEELFNVFFGGHFPSGNIHMFSNVTDDSQYYRRRHRHERTQTHKREE
                     DKSQTPYSAFVQLLPVLVIVTISVITQLLAANPPYSLFYKSTLGYTISRETQNLQVPY
                     FVDKNFDKAYRGASLRDLEKTIEKDYIDYIQTSCWKEKQQKSELTNLAGLYRDERLRQ
                     KAESLKLENCAKLSKLIGLRRAG"
     exon            120..306
                     /gene="Dnajc18"
                     /gene_synonym="2700075B01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            307..452
                     /gene="Dnajc18"
                     /gene_synonym="2700075B01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            453..638
                     /gene="Dnajc18"
                     /gene_synonym="2700075B01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            639..745
                     /gene="Dnajc18"
                     /gene_synonym="2700075B01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            746..855
                     /gene="Dnajc18"
                     /gene_synonym="2700075B01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            856..1028
                     /gene="Dnajc18"
                     /gene_synonym="2700075B01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1029..5169
                     /gene="Dnajc18"
                     /gene_synonym="2700075B01Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1223..1228
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Dnajc18"
                     /gene_synonym="2700075B01Rik"
                     /note="hexamer: AATACA"
     polyA_site      1243
                     /gene="Dnajc18"
                     /gene_synonym="2700075B01Rik"
                     /note="major polyA site"
     regulatory      5147..5152
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Dnajc18"
                     /gene_synonym="2700075B01Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      5169
                     /gene="Dnajc18"
                     /gene_synonym="2700075B01Rik"
                     /note="major polyA site"
ORIGIN      
        1 gtgccccgcg ctctgcgccc cttctctttc agcctccggg acttgagagg ctcagtcgat
       61 ctgctgacag aaaaccgata tggcgaccac tctgggcagc ggagagcgct ggacccaagc
      121 ttacattgat gcaattagaa gaaacaaata cccagaagac aagcggcctg acagccatga
      181 tccttgcggc tgctgtaact gcatgaaggc gcaaaaggaa aaaaagtctg agaatgagtg
      241 gaatcagacg cggcagggag aggggaacgc cacttacaca gaggaacagc tacgtggggt
      301 acaaagaatc aagaagtgca gaaattacta tgacatcctg ggtgtttctc acaatgccag
      361 cgatgaagag cttaagaaag cgtacaagaa gcttgccctg aagtttcacc ccgacaagaa
      421 ctgcgctcct ggagcaacag aggccttcaa agcaatagga aatgcctttg cagtcctgag
      481 caatcccgac aagagactcc gctatgatga atatggagat gagcaggtga ctttcactgt
      541 ccctcgagcc agatcttatc attattacaa agactttgaa gctgacatct ctccagaaga
      601 attatttaat gtgttcttcg gaggacattt cccttcagga aatattcaca tgttctcaaa
      661 tgtgacagac gacagtcagt attatcgccg gcgacaccgc cacgagagga cacagacaca
      721 taagagagag gaagacaaat ctcagactcc atattcggca tttgttcagc tgcttccagt
      781 tctggtgatt gtgactattt ctgtcattac tcagctgctc gctgctaatc ccccatatag
      841 tctgttctat aaatcgacct tgggctatac catttctaga gaaacgcaga acctgcaggt
      901 gccttacttc gtggataaaa actttgacaa ggcctaccga ggcgcttccc ttcgtgacct
      961 ggagaagaca atagagaaag actacattga ttacatccag acgagttgtt ggaaggagaa
     1021 acagcaaaag tcggagctga ccaatttggc ggggttatac agagatgagc gactgcggca
     1081 gaaagcagag tcactgaaac tcgaaaactg tgcaaagctt tccaagctca ttggcctgcg
     1141 cagggccggc tgagaggcca gcgaccctac tctgggtggg gggttcttac ccgttacaat
     1201 tgcattgcaa atcccatttt ataatacaag ttaggagata tgagcacttt actctctgct
     1261 gactttgttg ggcagagctg cagtgattgg agacttgtcc cctccagtcc ttccccaggc
     1321 ctggctccca gggcagaaca gttggtctta gtcacaggca tggtaaagtt tggacccaac
     1381 tcctctgtga agtaggtcag ggcattccag agacgaccca tgtttcgtcc ttcatcctgt
     1441 ctgcagcaaa agcccactac ctaggcatgt ctaggcttag ccagtgcact gcagagtatt
     1501 ggtggtgtct gccaagaatt atacctctcc tgctgtaaag tcaccacctc ccctgatttt
     1561 cagttttcca ctccctaagg actgtagaga aattgaacta cgtagccaac agttcagtgt
     1621 tatccaaatc tctgttgagt taggaccata agcaaagctg cctgatttga ggtttctttt
     1681 tttgagagaa gggctcactc tgcagcccag accagtctgg aactcactac ctagtccaag
     1741 ctggcctgag tctgcagtga ttctcctgcc tgagcctctt gagagctgtg atttcagttg
     1801 tgagccacca taggtgaggc tcctttattg tcttagtctt ctctttcaga aggtctaaga
     1861 agtaaaacct ggttgagcag gctgggtttg gtggcctaca tctttaatct taggactcag
     1921 gaggcacaag caggccattc tctcttagtt caaggccagc ctgggttaca tatcagttcc
     1981 agaccagcca aagttacata atgagacctt gcctcaaaca aacaaacaaa caaacaagca
     2041 aaaaaacctg ctgggcttgg agacagctca gtgaacagtc cagcagcagg tagcagggct
     2101 aagggagaag gtgaaatcta agactgtcag ctcttcactg tagatcccct ggtccatttc
     2161 tgaactggag aacactctct gtgtccctcc ctttaaatca tcatttagtg ttaacggttg
     2221 tatgatgagc acaggaatgc acagaagggc aggagccaaa ctggagagga gacacaggca
     2281 cagagacaca gagggaagag tctgtcaccg tggcatggga ggctcagagt tagcagccat
     2341 tttgtctggc tgagtgccct gcacatttta gtgtgagata gtgatgtgac ctttcaccca
     2401 ttcaatattt atgaagtgcc tactgcaaag aggcctttca aactcacgtg gtgttctgtt
     2461 ttattttgtt ttttcactta ttcctcataa cagtttgtga aaccggtatg ttagcccttt
     2521 tatgaattgg ccagagagga tgagtggtcg gcctaggtca tatgtctagg tgaggaaaga
     2581 ctgtgtgtga gaagtcatcc tttttctcgg gtgattctag ccagtttggc aaagcagact
     2641 tacccatcct ccaggacacc tccgccccca cctcgcatcc tttccaggcc atcctgagtc
     2701 cctacagggc tgcttccctg ctgggcgttt agaagcagga tcagggctgg agagaggctg
     2761 ggcagttaga agagcactgg cttctcttcc agaggactca ggttcaattc cccgcaccca
     2821 cctggtggct cccaacattc tgtaactcca gttccagggg acctgaccct ctttggcctc
     2881 cacaggcatt gcctgcacct ggtgcacgga cacacatgca ggcagtgtaa cacccacata
     2941 catttttttt ttttaaagca ggacacttga ttcaaatcct ttagaggcag aaaaagcaac
     3001 tctttctaga actaagtcaa ggattgccta ggctgtgtgg ttgggccttc ctgtggaggt
     3061 cggatttaga tttgagttcc tgagctgccc agattatcat gaaactgaat ttaaaagaag
     3121 ccggtaactg atttatagtc tttttttttt ttcttttttt ttttttttta ggtagggtct
     3181 catgtagccc aggctggcct caaaattcat atacagtcaa aaaccttgaa caacttcttg
     3241 attgtttggg ttttgttgtt ttgttttaaa tttttaattt tatgtagccc tggctgtcct
     3301 ggaactcact gtagaccagg ctgatgttga actcagagat ctgcctgcct ctgcttcctg
     3361 agtgacggga ttaaaggcat ttaccaccat gcccggccct gtttgtatgt ttgttcgttt
     3421 tttgaaaggt ttttctgtat agccctggct gtcgtggaac tcactttgta aatcagactg
     3481 gtcttgaact cacagatctt cctgccaatg tctctggagt gctggttatc tggattcaag
     3541 gtgtgtgcca ccacttccca agacattgga cttgtgattc tcctgcctct acctcctgaa
     3601 tgctagagtt agacctggtt tctgtggtac tggagattga gcccaaggct ttgtgcatgc
     3661 tagcctaccg agctacatcc ccagccttac cttcctaatt ttttgagaat ctctttaact
     3721 tatgagcagc aaggagttta ttttgtaaaa tgtgtcaggc atggtggcat atagctttaa
     3781 acccagcact cagaattcag aggcagacgg aatactgtga gttcaaggcc agctgctcta
     3841 cacagaaagt tcacagcgaa accttgtctc aaaacatacg ttgtaaaatg tacctatgaa
     3901 ccaaacttaa ggaaagctcc tagacatgaa agcttccctc tcccagcccc aggctctgct
     3961 agaaaatgca ctgttatgaa actgccctga cagcgtaagg cccctcccac tagacgactt
     4021 ttactaattc tgtagatttc ctggcactga gagttatctg tgaggtgatg ataaccagag
     4081 acaacactaa cagctccgtc aactgttgca cctattgtct gttcttacag cctggtggca
     4141 ctgttttatt tattactgta gcctacagta ctcatatcct gtttccttgc ttcagttgaa
     4201 agataatatg gcactatcta gaatagtgtt aaactcttaa ttccttgctt acagtttaga
     4261 tatgttgtct gtgtgttggt gaacaaagtt ttgttctcct gcctacatct tttgggagac
     4321 ttcctggcac agtgagttct ctgctggggc tgtttttgct ctgtgtgtgt gtgtgtgtgt
     4381 gtgtgtgtgt gtctcacaga ttgagaccac agaatggaga ctgacgggag tgaggctcgc
     4441 acaggagtgg aagctgccat tcccgagagg tgctttcttt agtgagaggg agacagaaaa
     4501 tccttttcct tctatggaac agtagagcct gaaggggcaa gttcatcact caagccagga
     4561 aaacatctcc gcttcactga ccggcgccag gcctcacagc ttgggagaag cgacctacgg
     4621 taaggaaata gcattgctct gcatgcttat gggaactgtt agaaaggaca agaagtgcag
     4681 aaccctgctg gagcccgatc cagccagctg ctgaattctc catccgcaag tctccatcct
     4741 cactcctctg aactggcgct gccagaggca ccttgggaat cccagcaggt tcctgttgca
     4801 aatggccctc accaccaact cattgtctct gcatgcacgg ctcctcccag gggctggcgt
     4861 taaatctgta ctcacttaag gtgttagatt ggtgtcctaa tccctttatt ttgggaaggg
     4921 gccaagttac taaacacctt gacgtttggg cctgtgctgt tgatacctca tgcagtatca
     4981 agtaactgtt acatcctgag tacatttgca tttggggagg tggagaaggg aatgttctgg
     5041 ggccagagtc ggggttgaca tatgtgaaat cagttggcag tgaaaaatgc tgagaactct
     5101 ggtcacctga cccatggcgt ttggagtgag ttttaacaaa gtgaacatta aacgatttta
     5161 catacaaaa
//
