LOCUS       NM_013888               1305 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus DnaJ heat shock protein family (Hsp40) member C12
            (Dnajc12), transcript variant 1, mRNA.
ACCESSION   NM_013888
VERSION     NM_013888.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1305)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1305)
  AUTHORS   Chatterjee,S., Nandakumar,P., Auer,D.R., Gabriel,S.B. and
            Chakravarti,A.
  TITLE     Gene- and tissue-level interactions in normal gastrointestinal
            development and Hirschsprung disease
  JOURNAL   Proc Natl Acad Sci U S A 116 (52), 26697-26708 (2019)
   PUBMED   31818953
REFERENCE   3  (bases 1 to 1305)
  AUTHORS   Jones,M.R., Dilai,S., Lingampally,A., Chao,C.M., Danopoulos,S.,
            Carraro,G., Mukhametshina,R., Wilhelm,J., Baumgart-Vogt,E., Al
            Alam,D., Chen,C., Minoo,P., Zhang,J.S. and Bellusci,S.
  TITLE     A Comprehensive Analysis of Fibroblast Growth Factor Receptor 2b
            Signaling on Epithelial Tip Progenitor Cells During Early Mouse
            Lung Branching Morphogenesis
  JOURNAL   Front Genet 9, 746 (2019)
   PUBMED   30728831
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 1305)
  AUTHORS   Lee,J., Hahn,Y., Yun,J.H., Mita,K. and Chung,J.H.
  TITLE     Characterization of JDP genes, an evolutionarily conserved J
            domain-only protein family, from human and moths
  JOURNAL   Biochim Biophys Acta 1491 (1-3), 355-363 (2000)
   PUBMED   10760603
REFERENCE   5  (bases 1 to 1305)
  AUTHORS   Hahn,Y., Lee,J., Seong,C., Yoon,J. and Chung,J.H.
  TITLE     Structural analysis of phylogenetically conserved J domain protein
            gene
  JOURNAL   Biochim Biophys Acta 1447 (2-3), 325-333 (1999)
   PUBMED   10542335
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC153516.8, DV042983.1, AC164179.7, AK002649.1 and BM899037.1.
            
            On Jul 3, 2010 this sequence version replaced NM_013888.2.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC013501.1, AF132906.2 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-85                AC153516.8         17953-18037         c
            86-386              DV042983.1         101-401
            387-387             AC153516.8         7267-7267           c
            388-455             DV042983.1         403-470
            456-456             AC164179.7         81711-81711
            457-813             DV042983.1         472-828
            814-1275            AK002649.1         502-963
            1276-1305           BM899037.1         1-30                c
FEATURES             Location/Qualifiers
     source          1..1305
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="10"
                     /map="10 32.57 cM"
     gene            1..1305
                     /gene="Dnajc12"
                     /gene_synonym="Jdp1; mJDP1"
                     /note="DnaJ heat shock protein family (Hsp40) member C12"
                     /db_xref="GeneID:30045"
                     /db_xref="MGI:MGI:1353428"
     exon            1..213
                     /gene="Dnajc12"
                     /gene_synonym="Jdp1; mJDP1"
                     /inference="alignment:Splign:2.1.0"
     CDS             136..732
                     /gene="Dnajc12"
                     /gene_synonym="Jdp1; mJDP1"
                     /note="isoform 1 is encoded by transcript variant 1; dnaJ
                     homolog subfamily C member 12; j domain-containing protein
                     1; J domain protein 1; DnaJ (Hsp40) homolog, subfamily C,
                     member 12"
                     /codon_start=1
                     /product="dnaJ homolog subfamily C member 12 isoform 1"
                     /protein_id="NP_038916.1"
                     /db_xref="CCDS:CCDS23899.1"
                     /db_xref="GeneID:30045"
                     /db_xref="MGI:MGI:1353428"
                     /translation="MDAILNYRPEGSEDYYALLGCDELSSVEQILAEFKIRALECHPD
                     KHPENSKAVETFQKLQKAKEILCNAESRARYDHWRRSQMSMPFEQWEALADSVKTSMH
                     WAVRSKKDLMLEGSGQTFTSSVPNKERSEQRETKKGDPDSNPEKMKQKEPKFPEEGIS
                     PQNPDSPGLSDLNCGHLRFRWSGDAPSELLRKFRNYEI"
     exon            214..292
                     /gene="Dnajc12"
                     /gene_synonym="Jdp1; mJDP1"
                     /inference="alignment:Splign:2.1.0"
     exon            293..432
                     /gene="Dnajc12"
                     /gene_synonym="Jdp1; mJDP1"
                     /inference="alignment:Splign:2.1.0"
     exon            433..637
                     /gene="Dnajc12"
                     /gene_synonym="Jdp1; mJDP1"
                     /inference="alignment:Splign:2.1.0"
     exon            638..1289
                     /gene="Dnajc12"
                     /gene_synonym="Jdp1; mJDP1"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1218..1223
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Dnajc12"
                     /gene_synonym="Jdp1; mJDP1"
                     /note="hexamer: AATATA"
     polyA_site      1239
                     /gene="Dnajc12"
                     /gene_synonym="Jdp1; mJDP1"
     regulatory      1253..1258
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Dnajc12"
                     /gene_synonym="Jdp1; mJDP1"
                     /note="hexamer: AATAAA"
     polyA_site      1276
                     /gene="Dnajc12"
                     /gene_synonym="Jdp1; mJDP1"
                     /note="major polyA site"
ORIGIN      
        1 gtgtttgcaa agggctggct tgacgtctgg gtgctcgctg gtttggaaag tcctgctgaa
       61 atgtaaagag ctttgctgtc gccccggagc tcacagtgtc ggtggcgtcg gagaggactg
      121 actcatccgc tgtaaatgga cgcgatactg aactacaggc cggagggcag cgaggactac
      181 tacgccttgc tgggatgcga tgagctctcc tcggttgagc aaatcttggc agaatttaag
      241 attagagctc tggagtgtca ccccgacaag catcctgaga actccaaagc tgtggagact
      301 tttcagaaat tgcagaaggc gaaggagatt ctgtgcaatg cagagagtcg agcccgctat
      361 gaccattggc ggaggagcca gatgtcaatg ccgttcgagc agtgggaagc tttggccgac
      421 tcagtgaaaa cttcgatgca ttgggctgtc agaagtaaga aggacttgat gctggaagga
      481 agtggccaga cgttcaccag ctcagttcca aacaaggaac ggagtgagca gcgggaaacc
      541 aagaaagggg acccagactc aaacccagag aaaatgaagc aaaaggaacc caagttccca
      601 gaggagggca tctccccaca aaacccagac tctccaggtc tctcagactt gaactgtggc
      661 caccttcgtt tccgctggtc tggtgacgct ccctcagaac tcctgcggaa gttcagaaac
      721 tatgaaatct gaagcattgc tgttctggga aggagggagg gcaaggcctt catctctgct
      781 gccaaagcga atctttatgt ctttaaaatg ttgtgtttgt gagttactca gaatggtcaa
      841 gtcccccatc ctcccttgaa gtcattctta cagtgtgctt tgtgttagtt tttactgggg
      901 attgaaccca ggaccttccg tatgctctgt atcattgatt cttacctcct acatgttgtt
      961 taagtgagaa aaatggttgt taagttgtag tttatttcaa tatttgagtc aattaaggct
     1021 cttagataca cttgtttcta agagtacatt tagatactat gtagtttgta tttctaagag
     1081 tatacttaga tactagttcc tattatatgt ttttcctgtt aatgttattt gtagatactt
     1141 gttaaaaatc attctctttt ggtgtcttgt gatccctacc catacaaaaa tgtcttttga
     1201 attttggttt aaaacaaaat atagacttac ttgtctaaat ttcatagagt gaaataaata
     1261 atttcctcaa agttcattta tgcatttaga aaaaaaaaaa aaaaa
//
