LOCUS       NM_172704               2944 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus DnaJ heat shock protein family (Hsp40) member C11
            (Dnajc11), mRNA.
ACCESSION   NM_172704
VERSION     NM_172704.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2944)
  AUTHORS   Violitzi,F., Perivolidi,V.I., Thireou,T., Grivas,I.,
            Haralambous,S., Samiotaki,M., Panayotou,G. and Douni,E.
  TITLE     Mapping Interactome Networks of DNAJC11, a Novel Mitochondrial
            Protein Causing Neuromuscular Pathology in Mice
  JOURNAL   J Proteome Res 18 (11), 3896-3912 (2019)
   PUBMED   31550165
  REMARK    GeneRIF: Mapping Interactome Networks of DNAJC11, a Novel
            Mitochondrial Protein Causing Neuromuscular Pathology in Mice.
REFERENCE   2  (bases 1 to 2944)
  AUTHORS   Ioakeimidis,F., Ott,C., Kozjak-Pavlovic,V., Violitzi,F.,
            Rinotas,V., Makrinou,E., Eliopoulos,E., Fasseas,C., Kollias,G. and
            Douni,E.
  TITLE     A splicing mutation in the novel mitochondrial protein DNAJC11
            causes motor neuron pathology associated with cristae
            disorganization, and lymphoid abnormalities in mice
  JOURNAL   PLoS One 9 (8), e104237 (2014)
   PUBMED   25111180
  REMARK    GeneRIF: a link between DNAJC11 and neuromuscular diseases
            Publication Status: Online-Only
REFERENCE   3  (bases 1 to 2944)
  AUTHORS   Evsikov,A.V., Graber,J.H., Brockman,J.M., Hampl,A., Holbrook,A.E.,
            Singh,P., Eppig,J.J., Solter,D. and Knowles,B.B.
  TITLE     Cracking the egg: molecular dynamics and evolutionary aspects of
            the transition from the fully grown oocyte to embryo
  JOURNAL   Genes Dev 20 (19), 2713-2727 (2006)
   PUBMED   17015433
REFERENCE   4  (bases 1 to 2944)
  AUTHORS   Bailey,P.J., Klos,J.M., Andersson,E., Karlen,M., Kallstrom,M.,
            Ponjavic,J., Muhr,J., Lenhard,B., Sandelin,A. and Ericson,J.
  TITLE     A global genomic transcriptional code associated with CNS-expressed
            genes
  JOURNAL   Exp Cell Res 312 (16), 3108-3119 (2006)
   PUBMED   16919269
REFERENCE   5  (bases 1 to 2944)
  AUTHORS   Cobellis,G., Nicolaus,G., Iovino,M., Romito,A., Marra,E.,
            Barbarisi,M., Sardiello,M., Di Giorgio,F.P., Iovino,N., Zollo,M.,
            Ballabio,A. and Cortese,R.
  TITLE     Tagging genes with cassette-exchange sites
  JOURNAL   Nucleic Acids Res 33 (4), e44 (2005)
   PUBMED   15741177
  REMARK    Publication Status: Online-Only
REFERENCE   6  (bases 1 to 2944)
  AUTHORS   Da Cruz,S., Xenarios,I., Langridge,J., Vilbois,F., Parone,P.A. and
            Martinou,J.C.
  TITLE     Proteomic analysis of the mouse liver mitochondrial inner membrane
  JOURNAL   J Biol Chem 278 (42), 41566-41571 (2003)
   PUBMED   12865426
REFERENCE   7  (bases 1 to 2944)
  AUTHORS   Katoh,M. and Katoh,M.
  TITLE     Identification and characterization of FLJ10737 and CAMTA1 genes on
            the commonly deleted region of neuroblastoma at human chromosome
            1p36.31-p36.23
  JOURNAL   Int J Oncol 23 (4), 1219-1224 (2003)
   PUBMED   12964007
  REMARK    GeneRIF: E030019A03 is the mouse ortholog of human FLJ10737,
            consisting of the DnaJ domain, bipartite nuclear localization
            signal (NLS), FADH domain, and FEMCA domain.
REFERENCE   8  (bases 1 to 2944)
  AUTHORS   Carninci,P., Waki,K., Shiraki,T., Konno,H., Shibata,K., Itoh,M.,
            Aizawa,K., Arakawa,T., Ishii,Y., Sasaki,D., Bono,H., Kondo,S.,
            Sugahara,Y., Saito,R., Osato,N., Fukuda,S., Sato,K., Watahiki,A.,
            Hirozane-Kishikawa,T., Nakamura,M., Shibata,Y., Yasunishi,A.,
            Kikuchi,N., Yoshiki,A., Kusakabe,M., Gustincich,S., Beisel,K.,
            Pavan,W., Aidinis,V., Nakagawara,A., Held,W.A., Iwata,H., Kono,T.,
            Nakauchi,H., Lyons,P., Wells,C., Hume,D.A., Fagiolini,M.,
            Hensch,T.K., Brinkmeier,M., Camper,S., Hirota,J., Mombaerts,P.,
            Muramatsu,M., Okazaki,Y., Kawai,J. and Hayashizaki,Y.
  TITLE     Targeting a complex transcriptome: the construction of the mouse
            full-length cDNA encyclopedia
  JOURNAL   Genome Res 13 (6B), 1273-1289 (2003)
   PUBMED   12819125
REFERENCE   9  (bases 1 to 2944)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY784439.1, AK053156.1 and DV663024.1.
            
            On Jan 10, 2008 this sequence version replaced NM_172704.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK053156.1, AK171781.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-19                BY784439.1         11-29
            20-2278             AK053156.1         2-2260
            2279-2758           DV663024.1         286-765
            2759-2944           AK053156.1         2741-2926
FEATURES             Location/Qualifiers
     source          1..2944
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 82.77 cM"
     gene            1..2944
                     /gene="Dnajc11"
                     /gene_synonym="E030019A03Rik"
                     /note="DnaJ heat shock protein family (Hsp40) member C11"
                     /db_xref="GeneID:230935"
                     /db_xref="MGI:MGI:2443386"
     exon            1..105
                     /gene="Dnajc11"
                     /gene_synonym="E030019A03Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             34..1713
                     /gene="Dnajc11"
                     /gene_synonym="E030019A03Rik"
                     /note="DnaJ (Hsp40) homolog, subfamily C, member 11"
                     /codon_start=1
                     /product="dnaJ homolog subfamily C member 11"
                     /protein_id="NP_766292.2"
                     /db_xref="CCDS:CCDS18981.2"
                     /db_xref="GeneID:230935"
                     /db_xref="MGI:MGI:2443386"
                     /translation="MATALSEEELDNEDYYSLLNVRREASSEELKAAYRRLCMLYHPD
                     KHRDPELKSQAERLFNLVHQAYEVLSDPQTRAIYDIYGKRGLEMEGWEVVERKRTPAE
                     IREEFERLQREREERRLQQRTNPKGTISVGVDATDLFDRYDEEYEDVSGSGFPQIEIN
                     KMHISQSIEAPLTATDTAILSGSLSTQNGNGGGSVNFALRRVTSAKGWGELEFGAGDL
                     QGPLFGLKLFRNLTPRCFVTTNCALQFSSRGIRPGLTTVLARNLDKNTVGYLQWRWGI
                     QSAMNTSIVRDTKTCHFTVALQLGIPHSFALISYQHKFQDDDQTRVKGSLKAGFFGTI
                     VEYGAERKISRHSVLGAAVSIGVPQGVSLKVKLNRASQTYFFPIHLTDQLLPSAVFYA
                     TVGPLVVYLAVHRLIIRPYLRAQKEKELEKQRENTASDILQKKQEAEAAVRLMQESVR
                     RIIEAEESRMGLIIVNAWYGKFVNDKSRKNEKVKVIDVTVPLQCLVKDSKLILTEASK
                     AGLPGFYDPCVGEEKSLRVLYQFRGVLHQVMVPDSEALRIPKQSHRIDTDG"
     exon            106..235
                     /gene="Dnajc11"
                     /gene_synonym="E030019A03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            236..309
                     /gene="Dnajc11"
                     /gene_synonym="E030019A03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            310..411
                     /gene="Dnajc11"
                     /gene_synonym="E030019A03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            412..540
                     /gene="Dnajc11"
                     /gene_synonym="E030019A03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            541..663
                     /gene="Dnajc11"
                     /gene_synonym="E030019A03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            664..737
                     /gene="Dnajc11"
                     /gene_synonym="E030019A03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            738..927
                     /gene="Dnajc11"
                     /gene_synonym="E030019A03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            928..1013
                     /gene="Dnajc11"
                     /gene_synonym="E030019A03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1014..1130
                     /gene="Dnajc11"
                     /gene_synonym="E030019A03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1131..1286
                     /gene="Dnajc11"
                     /gene_synonym="E030019A03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1287..1356
                     /gene="Dnajc11"
                     /gene_synonym="E030019A03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1357..1414
                     /gene="Dnajc11"
                     /gene_synonym="E030019A03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1415..1557
                     /gene="Dnajc11"
                     /gene_synonym="E030019A03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1558..1687
                     /gene="Dnajc11"
                     /gene_synonym="E030019A03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1688..2944
                     /gene="Dnajc11"
                     /gene_synonym="E030019A03Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2183..2188
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Dnajc11"
                     /gene_synonym="E030019A03Rik"
                     /note="hexamer: TATAAA"
     polyA_site      2207
                     /gene="Dnajc11"
                     /gene_synonym="E030019A03Rik"
                     /note="major polyA site"
     regulatory      2918..2923
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Dnajc11"
                     /gene_synonym="E030019A03Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2940
                     /gene="Dnajc11"
                     /gene_synonym="E030019A03Rik"
ORIGIN      
        1 ctcgccggtt tggcggggtg aaaggttgcg aagatggcga cggccttgag cgaggaggag
       61 ctggacaatg aagactatta ctcactgctg aacgtgcgca gggaggcctc ttctgaagag
      121 ctgaaggctg cctaccggag gctgtgtatg ctttaccatc cggacaagca cagggaccca
      181 gagctcaaat cccaggcgga gcggctgttt aaccttgtgc accaggctta tgaagtgctt
      241 agtgatcccc aaacaagagc tatctatgat atatacggga agagaggcct ggagatggaa
      301 ggatgggagg tggtggaaag aaagagaacc ccagccgaga tcagagagga gtttgagaga
      361 ctccagagag agcgcgaaga gaggagacta caacagcgaa cgaaccccaa gggaaccatc
      421 agcgttggag tagatgcgac tgaccttttt gatcgttatg atgaggaata tgaagatgtg
      481 tccggaagtg gcttcccgca gattgagatt aataaaatgc acatatccca gtccattgag
      541 gcgcccttga cagccacaga cacagccatc ctctctggaa gtctctccac ccagaatggc
      601 aacggcggcg gctccgttaa ctttgcactc cgacgtgtca cctctgcaaa gggatgggga
      661 gagttggagt ttggagctgg agacctccag gggcctttat ttggtctcaa gctgttccgt
      721 aatctcaccc caagatgctt tgtgacgaca aactgtgctc tgcagttttc atcccgtggg
      781 atccggcctg gcctgaccac tgtgctagct cggaacctgg acaagaacac tgtgggctac
      841 ctgcagtggc gctggggtat ccagtcagcc atgaacacca gcatcgtccg ggacactaag
      901 acctgccact tcacggtggc cttgcagctg ggcatccctc actcctttgc actcatcagt
      961 tatcagcaca agttccagga cgacgaccag actcgagtga aagggtccct caaggcaggc
     1021 ttctttggga ccatagtgga gtatggagct gagaggaaga tttcccgaca cagcgtcttg
     1081 ggtgcggctg tgagcattgg cgtccctcag ggtgtgtctc tcaaagtcaa gctgaacagg
     1141 gccagtcaga cctacttctt ccccatccac ctgacggatc agctgctccc cagcgctgtg
     1201 ttctacgcca ccgtggggcc gctggtcgtc tacttggcag tgcacaggct gatcatcaga
     1261 ccgtacctca gggctcagaa agagaaggaa ctggaaaagc agagagagaa cacagccagc
     1321 gacatcctgc agaagaagca agaggcagag gccgctgttc ggctaatgca ggaatctgtc
     1381 cgaagaataa ttgaagcaga ggagtcacga atggggctta tcatcgtgaa tgcctggtat
     1441 gggaaatttg tcaatgacaa gagcaggaag aacgagaagg tgaaggtgat tgacgtgaca
     1501 gtgcccctgc agtgcctggt gaaggactcc aagctcatcc tcacagaggc ctccaaggca
     1561 gggctgccgg ggttctatga tccatgtgtc ggggaggaga agagcctgcg agtgctgtac
     1621 cagttccgag gtgtgctcca ccaggttatg gtgcctgaca gtgaggccct gaggatacca
     1681 aagcagtctc acagaatcga cacagacggg taaaccgctt gggaacctcg aggaaaaaga
     1741 ggctacgaaa accttttcct aagaggctac aaatttggaa gcagggaaaa cccagacatg
     1801 agatgttttt agtttatttc tccagaaggg ggcactgtat caattatgtg aagggacatg
     1861 cagacagcct agctccatgg tgctgtgggg taggactgag gagccctctg gccagacccc
     1921 agcacggcca tgtctctccc aaggatcatg ttcctggagg tcacgcccct ggtccttctc
     1981 ataagtggct gtgcacagca gctctctgga ggtatttgga acattctgct gtcacacatg
     2041 ggactgctct tcctgaagcc catgctgttc gtgggaaaca tgggaagaaa ggaagacgtg
     2101 tcgtgtgctg ctcagtagac ttcccacaag ccacctctct cttctgaaac gtcactgaat
     2161 ggactggaga ggactgcggg tttataaaac tgctttttat ctgagaacaa tgggtttgga
     2221 aactagtctc ttttcttccc acttttacag agcttctcaa atcattcctc caggccctga
     2281 cttggacagg taggggggca gaccctgggt cccaaggtgc actgtccagg cacactgccc
     2341 acattgctaa gagaagaggc cctgctgcca gtggaccctt caccccacac gagacacctg
     2401 tcttgccttt aggacaccct cctctagaga gtggtgttgg aaggagggga cctatgtaag
     2461 gagttggggc aggcatgaat ctgccaaata ctggatatgg atccaaggct ggcccaggca
     2521 cctgcacctc cagtgagtgg tcagcaggtg gcgctgctgc ccgccaggct tcacagagtc
     2581 cctttaggga gtctgctccc agatcccttc tggtgcacac ttactggatg tcactgcaag
     2641 ctctaccctc tgagcaggtg ttgcaccaca gtggcgctga ccctggcccc gcaactgcaa
     2701 ctgctgaagg caggcattgc ctcagccatt ctcaagaccc ttcaattttt aaaagcagtt
     2761 cgattctgta atatttattt ttctttttga ggatgtttcg ttgccccgca gactgactgc
     2821 agtgtgcacc attgcatgag ccctgcctca gtgccctgtg gctccctggg cactgctgcc
     2881 cctctgtcta aagctgactg tggcagcact gcccaacaat aaagctgacc taaaagctga
     2941 ggcc
//
