LOCUS       NM_178909               3431 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Mus musculus dynein axonemal assembly factor 10 (Dnaaf10), mRNA.
ACCESSION   NM_178909
VERSION     NM_178909.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3431)
  AUTHORS   Liu,X., Jiao,Y., Cao,Y., Deng,N., Ma,Y., Hasty,K.A., Kang,A.,
            Chen,H., Stuart,J.M. and Gu,W.
  TITLE     Decreased expression levels of Ifi genes is associated to the
            increased resistance to spontaneous arthritis disease in mice
            deficiency of IL-1RA
  JOURNAL   BMC Immunol 17 (1), 25 (2016)
   PUBMED   27480124
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3431)
  AUTHORS   Cobellis,G., Nicolaus,G., Iovino,M., Romito,A., Marra,E.,
            Barbarisi,M., Sardiello,M., Di Giorgio,F.P., Iovino,N., Zollo,M.,
            Ballabio,A. and Cortese,R.
  TITLE     Tagging genes with cassette-exchange sites
  JOURNAL   Nucleic Acids Res 33 (4), e44 (2005)
   PUBMED   15741177
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 3431)
  AUTHORS   Carninci,P., Waki,K., Shiraki,T., Konno,H., Shibata,K., Itoh,M.,
            Aizawa,K., Arakawa,T., Ishii,Y., Sasaki,D., Bono,H., Kondo,S.,
            Sugahara,Y., Saito,R., Osato,N., Fukuda,S., Sato,K., Watahiki,A.,
            Hirozane-Kishikawa,T., Nakamura,M., Shibata,Y., Yasunishi,A.,
            Kikuchi,N., Yoshiki,A., Kusakabe,M., Gustincich,S., Beisel,K.,
            Pavan,W., Aidinis,V., Nakagawara,A., Held,W.A., Iwata,H., Kono,T.,
            Nakauchi,H., Lyons,P., Wells,C., Hume,D.A., Fagiolini,M.,
            Hensch,T.K., Brinkmeier,M., Camper,S., Hirota,J., Mombaerts,P.,
            Muramatsu,M., Okazaki,Y., Kawai,J. and Hayashizaki,Y.
  TITLE     Targeting a complex transcriptome: the construction of the mouse
            full-length cDNA encyclopedia
  JOURNAL   Genome Res 13 (6B), 1273-1289 (2003)
   PUBMED   12819125
REFERENCE   4  (bases 1 to 3431)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   5  (bases 1 to 3431)
  AUTHORS   Piao,Y., Ko,N.T., Lim,M.K. and Ko,M.S.
  TITLE     Construction of long-transcript enriched cDNA libraries from
            submicrogram amounts of total RNAs by a universal PCR amplification
            method
  JOURNAL   Genome Res 11 (9), 1553-1558 (2001)
   PUBMED   11544199
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY794211.1, AK033294.1 and AL713926.9.
            
            On Sep 7, 2006 this sequence version replaced NM_178909.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK142228.1, AK088218.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-330               BY794211.1         2-331
            331-1886            AK033294.1         277-1832
            1887-3431           AL713926.9         75232-76776
FEATURES             Location/Qualifiers
     source          1..3431
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 9.75 cM"
     gene            1..3431
                     /gene="Dnaaf10"
                     /gene_synonym="HZGJ; Wdr92"
                     /note="dynein axonemal assembly factor 10"
                     /db_xref="GeneID:103784"
                     /db_xref="MGI:MGI:2144224"
     exon            1..254
                     /gene="Dnaaf10"
                     /gene_synonym="HZGJ; Wdr92"
                     /inference="alignment:Splign:2.1.0"
     CDS             72..1145
                     /gene="Dnaaf10"
                     /gene_synonym="HZGJ; Wdr92"
                     /note="WD repeat-containing protein 92; WD
                     repeat-containing protein Monad; WD repeat domain 92"
                     /codon_start=1
                     /product="dynein axonemal assembly factor 10"
                     /protein_id="NP_849240.1"
                     /db_xref="CCDS:CCDS24450.1"
                     /db_xref="GeneID:103784"
                     /db_xref="MGI:MGI:2144224"
                     /translation="MSTFEKPQIIVHIQKGLNYTVFDSKWVPCSAKFVTMGNFARGTG
                     VIQVYEIQRGDLKLLREIEKAKPIKCGTFGAASLQQRFLATGDFGGNLHIWNLEAPEM
                     PVYSVKGHKEIINTIDGVGGLGIGEGAPEIVTGSRDGTVKVWDPRQKEDPVANMEPAQ
                     GENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMSLRWETNIKNGVCSLEFD
                     RKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVTEKAHKSTVWQVRHLPQNREIFL
                     TTGGAGSLHLWKYEYPTQRSKKDSEGLEMGVAGSVSLLQNVTVSTQPISSLDWSPDKR
                     GLCVCSSFDQMVRVLIVTKLQTI"
     exon            255..355
                     /gene="Dnaaf10"
                     /gene_synonym="HZGJ; Wdr92"
                     /inference="alignment:Splign:2.1.0"
     exon            356..486
                     /gene="Dnaaf10"
                     /gene_synonym="HZGJ; Wdr92"
                     /inference="alignment:Splign:2.1.0"
     exon            487..588
                     /gene="Dnaaf10"
                     /gene_synonym="HZGJ; Wdr92"
                     /inference="alignment:Splign:2.1.0"
     exon            589..704
                     /gene="Dnaaf10"
                     /gene_synonym="HZGJ; Wdr92"
                     /inference="alignment:Splign:2.1.0"
     exon            705..839
                     /gene="Dnaaf10"
                     /gene_synonym="HZGJ; Wdr92"
                     /inference="alignment:Splign:2.1.0"
     exon            840..937
                     /gene="Dnaaf10"
                     /gene_synonym="HZGJ; Wdr92"
                     /inference="alignment:Splign:2.1.0"
     exon            938..3431
                     /gene="Dnaaf10"
                     /gene_synonym="HZGJ; Wdr92"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2013..2018
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Dnaaf10"
                     /gene_synonym="HZGJ; Wdr92"
                     /note="hexamer: AATAAA"
     polyA_site      2033
                     /gene="Dnaaf10"
                     /gene_synonym="HZGJ; Wdr92"
                     /note="major polyA site"
ORIGIN      
        1 agggagggac aaactgcccc tgatctgttt gcagtctggt taccaagtta gcgtttggtt
       61 gcatctacac catgtccacc ttcgagaagc ctcagatcat tgtccacatt caaaagggcc
      121 tcaactacac agtgttcgac agcaaatggg tgccctgcag tgccaaattc gtgacgatgg
      181 gcaactttgc ccggggcacc ggcgttatcc aggtgtacga gatccagcgc ggggacctca
      241 agctgctgcg ggagattgaa aaggccaagc ccattaaatg tggaacattt ggtgccgcat
      301 ctctgcagca gagattctta gctactggag attttggtgg aaatcttcat atatggaact
      361 tggaagctcc agagatgcca gtgtattctg taaagggcca caaagaaatc ataaatacca
      421 tagatggtgt aggtggactt ggaattgggg aaggagcccc tgaaatcgtg acgggcagcc
      481 gtgatggaac tgtaaaggtg tgggacccaa ggcaaaaaga ggatcctgtc gctaacatgg
      541 aacctgcaca aggagaaaac aagagagact gttggaccgt ggcatttggc aatgcttata
      601 atcaagaaga acgtgttgtc tgtgctggct atgacaatgg ggacatcaag ctgtttgacc
      661 tcaggaacat gtcactgcgg tgggagacaa acattaaaaa tggggtatgc agcttggaat
      721 ttgacagaaa ggacatcagt atgaataagt tggtagctac atctctagaa gggaagttcc
      781 acgtcttcga catgagaaca cagcatccta ccaagggctt tgcttctgtt acagaaaagg
      841 cccataaatc cactgtatgg caagtccggc acctgcctca aaacagggag atctttctga
      901 caacgggagg cgctgggagt cttcacctct ggaagtatga atacccaact cagcggtcaa
      961 agaaagattc cgagggcttg gagatgggag tcgcaggttc cgtcagcctt ctgcagaacg
     1021 tgaccgtgtc tactcagccc atctccagtt tggactggag tcctgacaaa agggggctct
     1081 gcgtctgtag ttcatttgac cagatggtgc gtgtgctgat agttacaaag ctccagacca
     1141 tttgactcag actttacact tgacattgtc cagagggttg ctcacagaac tgtaacttga
     1201 tctgtgttct gcatcctctg gccccattga agacggttgg atttgagtga tgagtgacag
     1261 ccatgggcac aaagccagcc agccagcctc tagcatcttt gggtgtttgc tggcctgacc
     1321 agcatgctgc tgcacgtgaa ggccccacac accagcacca gctttgttcc ttttccccat
     1381 gtttctactc agaaacatta gggccaggag ttgtggtgcc agctacttaa caagctgagg
     1441 caggaggatc aatgtagtcc ataagatcaa gactagcttg ggcagcatag tgagactctg
     1501 cctttaaata tagttggatg agacccaagt ttgatcatca gtatctctat caggtgactt
     1561 ataattcctg taagtccagt tgcagggcat ctcataccat tttctggctg tattgggcag
     1621 tggtacccac agacacatgc acattcttag aaattaaaaa aaaattgttt ttaaattaaa
     1681 aaaaaatgta aagccaaagt cagtagttgt tatttaagtg tatttaagtc tgttctgtat
     1741 ctgcatagct ctgtgctttc tctgtacact gtgctcctac tcggagtcac ttcacttgct
     1801 ctgtaaagct ccagaagaac acggttcgac tagccagcct ggagaactgt tttcagcagt
     1861 gtaactggta aaatactgtg acttccagct gtctctcgtt tactcagata ccagccttag
     1921 ttgtcttttg actgtggtaa gtgatgacga gccgttgaag attgaatttg tttttaaacc
     1981 tttttgtcaa acctttaaaa tatatatttt aaaataaaca ggtttttaaa atatttggag
     2041 gcgttgattc tttccctttg ttcccttctt cctccttgtt aagtgcacct tagtttcact
     2101 ggcccacatc ataagctgag cctccggaag gactggatta atcatacctg caataaacct
     2161 tgtgtctccc agctcagttc aaaggggcag agacatataa tattcatatt tacaaaacca
     2221 atgagctcta ttcccaacat gcttttatag aacagtgctg tggagggtta agtgcttgct
     2281 atgaaggagg aacgcctgag ttctgaggac tcatagtaag gtggaaagag acagccactc
     2341 agccctgacc actgacatat gtgcacagca tgctcacata cacatacaaa gcacatctaa
     2401 aaggaacgga gttgtaagta taatataata aaaataaaat tgatctttaa aaaggccgct
     2461 tggatttttc tcccaatgtt caaaaaagaa aaaaatagaa aatatatgag aatctggctt
     2521 cgagtatttg ttattgatga tagagaaagg tttaactaga acaattaatt tatttcatga
     2581 agtctaagat gtcagttgta gaattacctt gtactgaaga atgaaaaatt actggcctct
     2641 tgtaagaaca tgaacttttt acctcggagc ccaccccctc ccatctgaaa aacatttttg
     2701 agataaaggc ctcctggaac aacctcaaaa tgaaccgggt acattgccaa atgataggac
     2761 atgactcctt agttacgtag attccttgat aggacatgac tccttagtta cgtagattcc
     2821 tttggcagaa ctccctagtg atgtaaactt gtactttccc tgcccagttc tccccctttg
     2881 agttttacta tataagcctg tgaaaaattt tggctgaccg tcgattctcc tctacaccac
     2941 taggtgtatg agtttcgacc ccagagctct ggtctgtgtg ctttcatgtt gctgctttat
     3001 ttcgacccca gagctctggt ctgtgtgctt tcatgtcgct gctttattaa atcttacctt
     3061 ctacatttta tgtatggtct cagtgtcttc ttgggtacgc ggctgtcccg ggacttgagt
     3121 gcctgagtaa gggtctcact tcgggggtct ttcagtacca cagaggaaga acaagctgtc
     3181 atcaatgacg ttgctgccgt gcgttcttat cagctagtat ttggtttgta ctattttatt
     3241 ttggtaccgg gtatattttg tttatgtttt gaacccagac tggccttgaa ctctttatca
     3301 tctcactctg cctcaagtgt gcgccactat acgcggttcc ctcagatttc tctgtaaccc
     3361 tggctgtgct ggaacttgct gtgtaaatgt ttctgtctct caagcgctag gattaaaggt
     3421 gtgtgccacc c
//
