LOCUS       NM_001310684            1263 bp    mRNA    linear   ROD 07-AUG-2023
DEFINITION  Mus musculus DMRT-like family C1c2 (Dmrtc1c2), transcript variant
            2, mRNA.
ACCESSION   NM_001310684 XM_006528257
VERSION     NM_001310684.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1263)
  AUTHORS   Sharov AA, Piao Y, Matoba R, Dudekula DB, Qian Y, VanBuren V, Falco
            G, Martin PR, Stagg CA, Bassey UC, Wang Y, Carter MG, Hamatani T,
            Aiba K, Akutsu H, Sharova L, Tanaka TS, Kimber WL, Yoshikawa T,
            Jaradat SA, Pantano S, Nagaraja R, Boheler KR, Taub D, Hodes RJ,
            Longo DL, Schlessinger D, Keller J, Klotz E, Kelsoe G, Umezawa A,
            Vescovi AL, Rossant J, Kunath T, Hogan BL, Curci A, D'Urso M, Kelso
            J, Hide W and Ko MS.
  TITLE     Transcriptome analysis of mouse stem cells and early embryos
  JOURNAL   PLoS Biol 1 (3), E74 (2003)
   PUBMED   14691545
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CN703741.1, BC116811.1, AV363673.1 and AL773565.17.
            
            On Jul 17, 2015 this sequence version replaced XM_006528257.2.
            
            Transcript Variant: This variant (2) differs in the 5' UTR, lacks a
            portion of the 5' coding region and initiates translation from a
            downstream start codon, compared to variant 1. The encoded protein
            (isoform 2) has a shorter N-terminus, compared to isoform 1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC116811.1 [ECO:0000332]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-10                CN703741.1         1-10
            11-1114             BC116811.1         1-1104
            1115-1143           AV363673.1         81-109
            1144-1144           AL773565.17        69770-69770         c
            1145-1212           AV363673.1         111-178
            1213-1215           AL773565.17        69699-69701         c
            1216-1263           AV363673.1         182-229
FEATURES             Location/Qualifiers
     source          1..1263
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 45.76 cM"
     gene            1..1263
                     /gene="Dmrtc1c2"
                     /note="DMRT-like family C1c2"
                     /db_xref="GeneID:668357"
                     /db_xref="MGI:MGI:3802967"
     exon            1..26
                     /gene="Dmrtc1c2"
                     /inference="alignment:Splign:2.1.0"
     exon            27..200
                     /gene="Dmrtc1c2"
                     /inference="alignment:Splign:2.1.0"
     CDS             37..738
                     /gene="Dmrtc1c2"
                     /note="isoform 2 is encoded by transcript variant 2"
                     /codon_start=1
                     /product="DMRT-like family C1c2 isoform 2"
                     /protein_id="NP_001297613.1"
                     /db_xref="CCDS:CCDS81161.1"
                     /db_xref="GeneID:668357"
                     /db_xref="MGI:MGI:3802967"
                     /translation="MGPKDKAAVSCRPSTSECNMGNKTGAAAPVMEPILRGRANHPGR
                     GHSCGTRTQVRDHGEALLAVGSEQKGYSARGKRRQIRLPRTTLPRKPFDQAKKTPTKG
                     RGRPAKENPVSQPEDLPQASPQEESPHGSQVYCWPPALSPLPYMSVPPEQQLVAPPST
                     EIHGAFAESNPCSSMVLLPRTSTDHHHPLESQGSGASDQASVPASLECQEILEAAEAL
                     MTLKNSSWTWHQTHS"
     exon            201..352
                     /gene="Dmrtc1c2"
                     /inference="alignment:Splign:2.1.0"
     exon            353..411
                     /gene="Dmrtc1c2"
                     /inference="alignment:Splign:2.1.0"
     exon            412..548
                     /gene="Dmrtc1c2"
                     /inference="alignment:Splign:2.1.0"
     exon            549..612
                     /gene="Dmrtc1c2"
                     /inference="alignment:Splign:2.1.0"
     exon            613..742
                     /gene="Dmrtc1c2"
                     /inference="alignment:Splign:2.1.0"
     exon            743..1263
                     /gene="Dmrtc1c2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggagtgagtc tgagcagatc gattggccta agaaccatgg gaccaaaaga caaagcagct
       61 gtttcctgcc ggccctccac ctcggaatgt aacatgggga acaagactgg agcagcagca
      121 cctgtaatgg aacctatcct cagaggacgt gcaaatcacc ctggcagagg ccacagttgt
      181 ggcacccgga cccaagtcag ggaccacggc gaggccctgc tggctgtggg ttctgagcaa
      241 aaggggtata gtgcacgagg aaagagacgc cagattcgac taccaagaac gactctcccc
      301 cgcaaaccct tcgatcaggc caagaagacc cctaccaaag gaagaggtcg ccctgcaaag
      361 gagaaccctg tgtcccagcc tgaagacctg cctcaagcaa gcccccagga ggagagcccc
      421 cacgggtctc aagtgtattg ctggccccca gcactttcac ctctgcctta catgtcagtg
      481 cccccagagc agcagttggt ggctcctcct tccacggaga ttcacggggc ttttgctgag
      541 tccaacccat gctcaagtat ggtcctcctg ccacgtacct ccaccgatca ccaccatcca
      601 ctggagtcac agggctccgg tgcctctgac caggcctcgg ttcctgcctc cttagagtgt
      661 caggaaatac tggaggctgc tgaggccctg atgactctga agaactcttc ttggacctgg
      721 caccagaccc acagctaaac aggtcttgct tgaagttgga gcagtgaagc ctccccgccc
      781 atccgtgtga ttcagatcca ctggccagct ccacttcact tcctgttgag tgcaccttct
      841 tcttggactt aagggcccag aggtgggggg tgcggacttc ttcaagcact gagttgatgt
      901 tatgtgtggt tcctgtctga aatgcttaaa tgtgctttgt aagccttcgg gcatttaata
      961 agctttcaga ctcttctcat aatgtagatc tgttccttag cttgcatagt atgttcttgt
     1021 acccccatcc cttattcctt tggaagctga tgctattcaa tgtatcttct gtggatagca
     1081 ctgtgcaatt taatgtgacc agtctgtcgg tggggctctg agtgggttag tataccattg
     1141 tttgcatttg ttctgtgatt gcatatgtgc ccaggcaccc ctgtacttgt atgtggagaa
     1201 gtttcaactt gtgtctaggc ttgtatattt gaacaaataa taaagcattg gtaggagaca
     1261 ctg
//
