LOCUS       XM_006538517            3692 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus DNA fragmentation factor, beta subunit
            (Dffb), transcript variant X1, mRNA.
ACCESSION   XM_006538517
VERSION     XM_006538517.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000070.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 8, 2019 this sequence version replaced XM_006538517.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3692
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="4"
     gene            1..3692
                     /gene="Dffb"
                     /gene_synonym="40kDa; 5730477D02Rik; CAD; CPAN; DFF40;
                     Didff"
                     /note="DNA fragmentation factor, beta subunit; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 15 ESTs, 35 long SRA reads, and 98% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     24 samples with support for all annotated introns"
                     /db_xref="GeneID:13368"
                     /db_xref="MGI:MGI:1196287"
     CDS             133..927
                     /gene="Dffb"
                     /gene_synonym="40kDa; 5730477D02Rik; CAD; CPAN; DFF40;
                     Didff"
                     /codon_start=1
                     /product="DNA fragmentation factor subunit beta isoform
                     X1"
                     /protein_id="XP_006538580.1"
                     /db_xref="GeneID:13368"
                     /db_xref="MGI:MGI:1196287"
                     /translation="MCAVLRQPKCVKLRALHSACKFGVAARSCQELLRKGCVRFQLPM
                     PGSRLCLYEDGTEVTDDCFPGLPNDAELLLLTAGETWHGYVSDITRFLSVFNEPHAGV
                     IQAARQLLSDEQAPLRQKLLADLLHHVSQNITAETREQDPSWFEGLESRFRNKSGYLR
                     YSCESRIRGYLREVSAYTSMVDEAAQEEYLRVLGSMCQKLKSVQYNGSYFDRGAEASS
                     RLCTPEGWFSCQGPFDLESCLSKHSINPYGNRESRILFSTWNLDHI"
ORIGIN      
        1 caggtcctgc agtcggacgt ttccggttgc acctacctac gtagagaaaa gagttccggg
       61 ccgcgtctac gcaccacagt tccgggcagg aacgttacaa gtccagtgtc gctacggtac
      121 cgcagccctg caatgtgcgc ggtgctccgc caacccaaat gcgtcaagtt gcgagcccta
      181 catagcgcct gcaagttcgg cgtggcggcc cggagctgcc aggagctgct gcgtaagggc
      241 tgcgtccgct tccagctccc gatgcccggt tcccggctgt gcctgtacga agatggcacg
      301 gaggtgacgg acgactgctt cccgggcctt cccaacgacg ctgagctcct attgctcacc
      361 gctggcgaga cctggcatgg ctatgtgagt gacatcacac gtttcctcag tgtgtttaat
      421 gagccacatg ccggcgtcat ccaggctgca cggcaactgc tgtcagatga gcaggcccca
      481 ctgaggcaaa agctgctggc cgatcttctg catcacgtga gccagaatat tactgcagag
      541 acccgggagc aggacccatc ctggtttgaa ggtttggagt cgagattcag gaataagtcg
      601 ggctatctga gatacagctg tgagagtcgg atccggggtt acctaagaga ggtgagcgct
      661 tacacctcta tggtggatga agcagctcaa gaagagtacc tgcgagtcct tggctccatg
      721 tgccagaagc tcaaatcggt gcagtacaat ggcagctatt tcgacagagg tgcagaggcc
      781 agcagccgcc tctgtactcc agaaggatgg ttctcctgcc agggcccctt tgacctggag
      841 agctgtcttt ccaagcactc catcaacccc tatggcaaca gagagagccg gatcctcttc
      901 agtacctgga acctggatca tatatgagag acatccctgg ctctgacctc cagtctcttt
      961 ggggggagtt aatgtccgtg gtccccctcg gagtacttcc agccttttct gggtgttcag
     1021 tacactgtaa gtcccttcct gtcctcacca ccacttggtg tcactgtgcc tctgtattct
     1081 cctgcctgag gtaggtaccc acttggctgc ttttgtttga ttcctggtcc tggggaggcc
     1141 caggcctctg tagctctcca ccagcacagc tcattctccc cagcacagct ctctctcccc
     1201 agcacagctc tctctcccca gcacagctct ctctccccag cacagctctc tctccccagc
     1261 acagctctct ctccccagca cagctctctc tccccagcac agctctctct ccccagcaca
     1321 gctctctctc cccagcacag ctctcaggct gcttgctttc tctgttcttt acttttgtcc
     1381 tgggcactag ttccctcctg actgtctgtg tgacagatgt tgttgctgta tttttggcac
     1441 atttttgata tcttgtatca taaccagatg gggtggctgt ggtaagccct agaaggccag
     1501 gccccagtgt gcacagatcc tgcaattcct cctgcagatg caggggcatc tgcttgcccc
     1561 tgttgtctgc agctgcctct gccctgccct gcgcttagct gcaggggttg tctgctttta
     1621 ttttcacttc tagtttctgc tcctttgggc tttctctctg tttcctagat ttgcctcttg
     1681 tgttttcacg tctgctcaag gcaacatgtt gtccagctgt tctgaggttg ctattttgag
     1741 attaaggtgg ctgccttttc tggtgtgtct ttggcctgtc tgtctgtctg tcattttatg
     1801 ctgctctgct catcctttct gggctctggt acctgtaaga ggctgggact ctgcatgtcc
     1861 accctgcttt ctgtctcacc ttccctgggc taggtttttg ttaccttcac agcaggcgtc
     1921 tcttgttagc acattagtag caacagcaca ccaccttttg tcttgtctaa ctgagactct
     1981 cctactctgg tcccttgttc cagttgtcta cacatagtgg ctgtttagca tctattcagt
     2041 atttcattgc gtgaataagt gggtttgaat taatctcatt agccatttgc tgtacctcct
     2101 gtgtgcctgg tctcactgta tgtcctgagc ccgcctgtca cccctctctt ccagggctct
     2161 tttctcagca ttgtcccacc tgaccttgag cttacacggt ggtcatatca tcatggtcag
     2221 tacctactta catctcccac tcctctgctc actgcctcct gcctctccct ggtctgctct
     2281 gagttgctaa tgattggtcc tagcgcttcg gtaaggaggg cctgagggtg aactctctct
     2341 tgccacttct accctgagta ctggagaggg gctgtctcac actgagtgtg gtgtcactgg
     2401 catctaggtg tcctgtgcac tccgtgaggg agactcatca ctgtttcctg gcatctgctg
     2461 tggacctgct gtcagtcagc attctgcctc tggtggagat tggcttgagt cccttaactg
     2521 agagcagtgt acagtacaga caaacctttc cttttggctc tgccgtggct tgtcttccat
     2581 gctggagagt tctgattctc ctctgcagtg tcctggattc ccgtgggcat tctgggacct
     2641 tcttgccacc cactgtcttt atgctggctc tgcttgcaca ctctggctca gtgctgctgt
     2701 tttggggtaa cttcctgctg tggattcaat tgtggttcct cccacccccc acacacattg
     2761 taactgtcac ctagtgagac cgtatctgga gatgggtcct ttgagagaca gctaaggtga
     2821 agtgaggtca tagcaagcag aaaaatccag agctgttaaa catggagtta aacacggggg
     2881 aggtggtttg ccctccactc atctgttctt gcgactgtgt ttggacctga agttctctct
     2941 cgtgaccagt cttctcttct ggctgtcagt gtctctgggg cacagagtgg atctgtcacc
     3001 cctctcttcc agggctcttt tctcagcatt gtcccacctg tggattgccc cagtttcagt
     3061 ggctctgaag caacatgaca ttgtctttgc ttgccacttc tgtcacattg gccataccta
     3121 cttggctcat gtgcctgtgg gagacacagg cctggggtct atgggcagct gtgtgacatg
     3181 ggtacaggaa caagcaggag tcagcaggga ctgacaagtg ctcgctcaca catgaggctt
     3241 ggctccgttg aatggcatgc gagggacccc tctcagcttt ccccacactc ctttcagtat
     3301 ggtaagctgc gcccactact caggtttgca aagtaagaca agcagcattg cttgcgctgg
     3361 agtctgtaca ccgtggccac ccatggccca tgtcagggat gggccagtgt cagcagccca
     3421 cggaacacgg tgctggactc ctctggtgac tcatccctaa gtcctgtcat tttctcagtt
     3481 gaggtgccct cttcctagat gaccctagct tgtcatattg acaaaaacaa aaaaaaaaac
     3541 caaaaaaaca aaagaacagt cgggactgca ggaggttgcc tgccgtggta gacactgcat
     3601 ccacagacag cgagtgtctg tggctcacgg gagcgtgcac agcagcccgt agtgtgtggc
     3661 actcacagta gaatggttgt ctccccctga ct
//
