LOCUS       NM_001373917            3220 bp    mRNA    linear   ROD 01-MAY-2024
DEFINITION  Mus musculus deuterosome assembly protein 1 (Deup1), transcript
            variant 1, mRNA.
ACCESSION   NM_001373917 XM_006510160
VERSION     NM_001373917.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3220)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 3220)
  AUTHORS   Shin,M., Lee,J., Lee,H., Kumar,V., Kim,J. and Park,S.
  TITLE     Deup1 Expression Interferes with Multiciliated Differentiation
  JOURNAL   Mol Cells 46 (12), 746-756 (2023)
   PUBMED   38052490
  REMARK    GeneRIF: Deup1 Expression Interferes with Multiciliated
            Differentiation.
REFERENCE   3  (bases 1 to 3220)
  AUTHORS   Ho,K.H., Candat,A., Scarpetta,V., Faucourt,M., Weill,S., Salio,C.,
            D'Este,E., Meschkat,M., Wurm,C.A., Kneussel,M., Janke,C.,
            Magiera,M.M., Genovesio,A., Meunier,A., Sassoe-Pognetto,M.,
            Brill,M.S., Spassky,N. and Patrizi,A.
  TITLE     Choroid plexuses carry nodal-like cilia that undergo axoneme
            regression from early adult stage
  JOURNAL   Dev Cell 58 (23), 2641-2651 (2023)
   PUBMED   37890489
REFERENCE   4  (bases 1 to 3220)
  AUTHORS   Pina,J.O., Raju,R., Roth,D.M., Winchester,E.W., Chattaraj,P.,
            Kidwai,F., Faucz,F.R., Iben,J., Mitra,A., Campbell,K., Fridell,G.,
            Esnault,C., Cotney,J.L., Dale,R.K. and D'Souza,R.N.
  TITLE     Multimodal spatiotemporal transcriptomic resolution of embryonic
            palate osteogenesis
  JOURNAL   Nat Commun 14 (1), 5687 (2023)
   PUBMED   37709732
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 3220)
  AUTHORS   Moreau,M.X., Saillour,Y., Elorriaga,V., Bouloudi,B., Delberghe,E.,
            Deutsch Guerrero,T., Ochandorena-Saa,A., Maeso-Alonso,L.,
            Marques,M.M., Marin,M.C., Spassky,N., Pierani,A. and Causeret,F.
  TITLE     Repurposing of the multiciliation gene regulatory network in fate
            specification of Cajal-Retzius neurons
  JOURNAL   Dev Cell 58 (15), 1365-1382 (2023)
   PUBMED   37321213
REFERENCE   6  (bases 1 to 3220)
  AUTHORS   Otto,T., Candido,S.V., Pilarz,M.S., Sicinska,E., Bronson,R.T.,
            Bowden,M., Lachowicz,I.A., Mulry,K., Fassl,A., Han,R.C.,
            Jecrois,E.S. and Sicinski,P.
  TITLE     Cell cycle-targeting microRNAs promote differentiation by enforcing
            cell-cycle exit
  JOURNAL   Proc Natl Acad Sci U S A 114 (40), 10660-10665 (2017)
   PUBMED   28923932
REFERENCE   7  (bases 1 to 3220)
  AUTHORS   Marjanovic,M., Sanchez-Huertas,C., Terre,B., Gomez,R., Scheel,J.F.,
            Pacheco,S., Knobel,P.A., Martinez-Marchal,A., Aivio,S.,
            Palenzuela,L., Wolfrum,U., McKinnon,P.J., Suja,J.A., Roig,I.,
            Costanzo,V., Luders,J. and Stracker,T.H.
  TITLE     CEP63 deficiency promotes p53-dependent microcephaly and reveals a
            role for the centrosome in meiotic recombination
  JOURNAL   Nat Commun 6, 7676 (2015)
   PUBMED   26158450
  REMARK    Publication Status: Online-Only
REFERENCE   8  (bases 1 to 3220)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
REFERENCE   9  (bases 1 to 3220)
  AUTHORS   Zhao,H., Zhu,L., Zhu,Y., Cao,J., Li,S., Huang,Q., Xu,T., Huang,X.,
            Yan,X. and Zhu,X.
  TITLE     The Cep63 paralogue Deup1 enables massive de novo centriole
            biogenesis for vertebrate multiciliogenesis
  JOURNAL   Nat Cell Biol 15 (12), 1434-1444 (2013)
   PUBMED   24240477
  REMARK    GeneRIF: Deup1 governs deuterosome assembly to mediate large-scale
            de novo centriole biogenesis.
REFERENCE   10 (bases 1 to 3220)
  AUTHORS   Oduru,S., Campbell,J.L., Karri,S., Hendry,W.J., Khan,S.A. and
            Williams,S.C.
  TITLE     Gene discovery in the hamster: a comparative genomics approach for
            gene annotation by sequencing of hamster testis cDNAs
  JOURNAL   BMC Genomics 4 (1), 22 (2003)
   PUBMED   12783626
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC155249.2.
            
            On Sep 5, 2019 this sequence version replaced XM_006510160.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7345562.4342161.1,
                                           SRR10662773.1459859.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on manual assertion, conservation,
                                      expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-24                AC155249.2         44536-44559
            25-98               AC155249.2         45655-45728
            99-270              AC155249.2         60226-60397
            271-366             AC155249.2         61716-61811
            367-498             AC155249.2         64471-64602
            499-612             AC155249.2         71366-71479
            613-855             AC155249.2         72444-72686
            856-1001            AC155249.2         79905-80050
            1002-1107           AC155249.2         84291-84396
            1108-1302           AC155249.2         88053-88247
            1303-1389           AC155249.2         89771-89857
            1390-1586           AC155249.2         97038-97234
            1587-1698           AC155249.2         108355-108466
            1699-3220           AC155249.2         110997-112518
FEATURES             Location/Qualifiers
     source          1..3220
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 5.0 cM"
     gene            1..3220
                     /gene="Deup1"
                     /gene_synonym="4933401K09Rik; Ccdc67"
                     /note="deuterosome assembly protein 1"
                     /db_xref="GeneID:234964"
                     /db_xref="MGI:MGI:2443026"
     exon            1..24
                     /gene="Deup1"
                     /gene_synonym="4933401K09Rik; Ccdc67"
                     /inference="alignment:Splign:2.1.0"
     exon            25..98
                     /gene="Deup1"
                     /gene_synonym="4933401K09Rik; Ccdc67"
                     /inference="alignment:Splign:2.1.0"
     exon            99..270
                     /gene="Deup1"
                     /gene_synonym="4933401K09Rik; Ccdc67"
                     /inference="alignment:Splign:2.1.0"
     exon            271..366
                     /gene="Deup1"
                     /gene_synonym="4933401K09Rik; Ccdc67"
                     /inference="alignment:Splign:2.1.0"
     exon            367..498
                     /gene="Deup1"
                     /gene_synonym="4933401K09Rik; Ccdc67"
                     /inference="alignment:Splign:2.1.0"
     exon            499..612
                     /gene="Deup1"
                     /gene_synonym="4933401K09Rik; Ccdc67"
                     /inference="alignment:Splign:2.1.0"
     exon            613..855
                     /gene="Deup1"
                     /gene_synonym="4933401K09Rik; Ccdc67"
                     /inference="alignment:Splign:2.1.0"
     exon            856..1001
                     /gene="Deup1"
                     /gene_synonym="4933401K09Rik; Ccdc67"
                     /inference="alignment:Splign:2.1.0"
     exon            1002..1107
                     /gene="Deup1"
                     /gene_synonym="4933401K09Rik; Ccdc67"
                     /inference="alignment:Splign:2.1.0"
     exon            1108..1302
                     /gene="Deup1"
                     /gene_synonym="4933401K09Rik; Ccdc67"
                     /inference="alignment:Splign:2.1.0"
     exon            1303..1389
                     /gene="Deup1"
                     /gene_synonym="4933401K09Rik; Ccdc67"
                     /inference="alignment:Splign:2.1.0"
     exon            1390..1586
                     /gene="Deup1"
                     /gene_synonym="4933401K09Rik; Ccdc67"
                     /inference="alignment:Splign:2.1.0"
     exon            1587..1698
                     /gene="Deup1"
                     /gene_synonym="4933401K09Rik; Ccdc67"
                     /inference="alignment:Splign:2.1.0"
     exon            1699..3220
                     /gene="Deup1"
                     /gene_synonym="4933401K09Rik; Ccdc67"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2505..2510
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Deup1"
                     /gene_synonym="4933401K09Rik; Ccdc67"
                     /note="hexamer: AATAAA"
     polyA_site      2526
                     /gene="Deup1"
                     /gene_synonym="4933401K09Rik; Ccdc67"
                     /note="major polyA site"
     regulatory      3200..3205
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Deup1"
                     /gene_synonym="4933401K09Rik; Ccdc67"
                     /note="hexamer: AATAAA"
     polyA_site      3220
                     /gene="Deup1"
                     /gene_synonym="4933401K09Rik; Ccdc67"
ORIGIN      
        1 agacctctcc agacagcagt acagattaaa tatcaagaag taccaagcca gatgtagaca
       61 tttcttggca tggagaacca agcccatacc acagcaggag cttctccttg tgaagctgag
      121 cttcaggaac tgatggaaca aatcgacatc atggtaagca acaagaagct agactgggaa
      181 aggaagatgc gggctttaga gacacggtta gaccttcggg atcaagagtt ggccaacgca
      241 cagacttgct tggaccagaa aggccaggag gtggggttgc ttcggcagaa gctggacagc
      301 ctagagaaat gtaatctagt aatgactcag aactatgagg ggcagctaca gaccctaaaa
      361 gctcaatttt ctaagctaac cagtaacttc gaaaagctga gattacacca aatgaagcaa
      421 aaccaaattc accgaaagga gtcctccagc aaagaagaac tgccctttga gctgagcagt
      481 ctgaaccaga aactagagga gttccgagca aagtcgaggg agtgggacaa gcaggaggtc
      541 ctctaccaga cccacctggt gtccctggat gctcagcaga agttgctctc tgaaaagtgc
      601 agccagtttc agaaacaggc acaaaattac caaactcagc taaacgggaa aaagcagtgc
      661 gcagaggaca gcagctctga gatccctcgc ctggtgtgtg agtcggatcc tggctgtgaa
      721 gccactcaaa gagatgagtt cattatcgag aagttaaagt cggccgtgag tgaaatcgcg
      781 ctgagcagga acaagttaca agatgaaaac cagaagctcc tgcaggaact gaagatgtac
      841 cagaggcagt gccaggccat ggaagcagga ctgtcagagg tgaagagtga gttacagtcg
      901 cgagacgatc tcctgaggat tatagaaatg gaaagactgc acttgcatag agaactgctg
      961 agaatgggtg aagtgcagac tgctcaagat aacaggaaaa gagttgagtc atcatattcc
     1021 ccttctccta aagaagcaga aaggaaaagg aaggagttgt ttccaatggt ctcagatcaa
     1081 cccaatcatg aaaaggaatt aagcaagatg agaagccagc tctatcagga ggaaggccta
     1141 tgctccgagc aggaacggtt gaggagtgag atctcggaac tcacccagga acttcaccag
     1201 aaggaggtca ctatagcaac tgtcatgaag aaagctgccc ttctggaaag acagctaaag
     1261 atagaattag aaataaaaga aaggatgtta gcaaagcaac aggtttcaga tagaagatac
     1321 aaagctgtca gaacagaaaa cacacacctg aagggaatga tgggcgattt agaccctgca
     1381 cggtacttgg ctgtggactt aagtaacaag aagcattcac agtgcacatc aattaacaag
     1441 cttgaatatg agaacgaaag actccgaagc gatctcgcca agctccatgg caatggaaaa
     1501 gcagcgtggc ccaatcagag cagctatggt gaagcagggg catacgtctt ccagagccag
     1561 ctgaaaacgg agaccagtgg agacagaatt agccaagact gcgagctgaa cagaagcccc
     1621 acacccttgt cgcctttgcc atttcagacc aaagaaatgg caagcccatt ggttggtgac
     1681 aatgaagtcc tcgctctgtc tccaccagat atatccttcc gggcttccct agctgcacag
     1741 cacttcctga tggaggaaga gaggcgggcc aaggagcttg agaagctgct caacacacac
     1801 atcgatgagc tgcagagaca caccgagttc acgcttaaca aatacaccaa actcaagcag
     1861 agtagacaca tatgagcttt gcaccttttc tgtttgcttc ctctccagga gaaaaagaaa
     1921 agcttccgag aaacacttgc aaagcggact cataaaaccg agaaatctgg cttagtttcc
     1981 acaagtaaat cacttctgta aggcagctag aaaactagga ttttgttcta taaagctgat
     2041 tctgtttctg cagtccacat actaattgtt ctgttaggat agcataaaca tgcatagccc
     2101 caaagggctt ctttcctgtc taaggaatgg cttgggatta taacagaatt atttctgact
     2161 ttaatcatgt atgctaaggt cccattgcct gcgtatcagg cagcaagaga gggaagtgct
     2221 cacctcccaa tgtgaggaag ctgagtgcag ccagtctgtg ctgggcacaa aacccaagga
     2281 cttctaaagt gggaggacta tgcagacacc taagatttgt ttcagaagca aacggaatgt
     2341 ctttgctgct tttacattct cttttgtaat attcttcctt aacaccaagg actttgtgca
     2401 gtgtgcacag taaccgtcac tgtgccagag tcatgctgcc actgagacac agcagatgca
     2461 cagcttcatg ctgcctccgt ctgtttcacc actgtttgtg atacaataaa ggaatgcaaa
     2521 actcaattgc tttgcaagag tgtccagttt ctacagaagt aatagcaaga tgatgaacaa
     2581 tgaaattcac ataacaaata cacaaggatg ataagccaat accctgaata cacacagaga
     2641 caagagacac ttgctatata gtatgcatgt atgcccaaca cacacacaca cacacacaca
     2701 cacacacaca cacacacaca cacacaccac atatcagcac catttaaagt taggcatttg
     2761 atatcagcaa agctagtgtg ttaggggtca gcatggtgcc tcactgagaa agagggcttg
     2821 ctgctcaatc acgaagacct gagttcaggt ccaggcaacc atgtgaagag acagaacatg
     2881 gcgatacata cctgtaagcc tcatgctatg tgtgcagaga caggaaaatc actggggctt
     2941 gctggctgcc aacctagctc caggttcaat gagagaccct ttctcaggaa aggaatgtga
     3001 agaatggcag agcagaacac ctgaaatcac cctctggcct ctgcttgcac ccacaggtaa
     3061 acacgtcttc atatgcatac acttgaaaac cagtaaaaaa ataaaagtac cctgtagtaa
     3121 gcaggataga agcaaacatg tggatttctg actcttggct ctcactataa tggcatttcc
     3181 tgtaagcagg cagatgggaa ataaagatac attcaaaaca
//
