LOCUS       NM_001378378            2757 bp    mRNA    linear   ROD 09-JUN-2024
DEFINITION  Mus musculus DERPC proline and glycine rich nuclear protein
            (Derpc), transcript variant 3, mRNA.
ACCESSION   NM_001378378
VERSION     NM_001378378.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2757)
  AUTHORS   Guo,A., Gu,H., Zhou,J., Mulhern,D., Wang,Y., Lee,K.A., Yang,V.,
            Aguiar,M., Kornhauser,J., Jia,X., Ren,J., Beausoleil,S.A.,
            Silva,J.C., Vemulapalli,V., Bedford,M.T. and Comb,M.J.
  TITLE     Immunoaffinity enrichment and mass spectrometry analysis of protein
            methylation
  JOURNAL   Mol Cell Proteomics 13 (1), 372-387 (2014)
   PUBMED   24129315
REFERENCE   2  (bases 1 to 2757)
  AUTHORS   Church,D.M., Goodstadt,L., Hillier,L.W., Zody,M.C., Goldstein,S.,
            She,X., Bult,C.J., Agarwala,R., Cherry,J.L., DiCuccio,M.,
            Hlavina,W., Kapustin,Y., Meric,P., Maglott,D., Birtle,Z.,
            Marques,A.C., Graves,T., Zhou,S., Teague,B., Potamousis,K.,
            Churas,C., Place,M., Herschleb,J., Runnheim,R., Forrest,D.,
            Amos-Landgraf,J., Schwartz,D.C., Cheng,Z., Lindblad-Toh,K.,
            Eichler,E.E. and Ponting,C.P.
  CONSRTM   Mouse Genome Sequencing Consortium
  TITLE     Lineage-specific biology revealed by a finished genome assembly of
            the mouse
  JOURNAL   PLoS Biol 7 (5), e1000112 (2009)
   PUBMED   19468303
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC123864.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK165993.1, SRR7345562.2027816.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-93                AC123864.4         115086-115178
            94-2757             AC123864.4         122153-124816
FEATURES             Location/Qualifiers
     source          1..2757
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8"
     gene            1..2757
                     /gene="Derpc"
                     /gene_synonym="Gm50241"
                     /note="DERPC proline and glycine rich nuclear protein"
                     /db_xref="GeneID:116621581"
                     /db_xref="MGI:MGI:6303050"
     exon            1..93
                     /gene="Derpc"
                     /gene_synonym="Gm50241"
                     /inference="alignment:Splign:2.1.0"
     exon            94..2757
                     /gene="Derpc"
                     /gene_synonym="Gm50241"
                     /inference="alignment:Splign:2.1.0"
     CDS             315..1916
                     /gene="Derpc"
                     /gene_synonym="Gm50241"
                     /codon_start=1
                     /product="decreased expression in renal and prostate
                     cancer protein"
                     /protein_id="NP_001365307.1"
                     /db_xref="GeneID:116621581"
                     /db_xref="MGI:MGI:6303050"
                     /translation="MKEPRIFPRERPTPWTRAPLPPRGRLDGGPVMNAGHPMGVNSDP
                     FLMAAGSLGGNLAPFPRNAAPFQNPSGSLASNPAHFAAGARDPGMTSFPRGMNPTGTG
                     AVSFPRPGGLLGPGPGPGLNPRTGALPGPGPMSNPRLGGLPGPGPMANPRAGGLLGAS
                     PDPRSGGPMVPGCGPNMRAGVLSSGTGPPNPRPVGLGPGPSPNLRSSFLGTNPAPRSG
                     MFPGPGLGPNPRACGLGPGLGPNPRAGGLGPGPNLDNRAGGLLGTGSGLNLRMAGPQG
                     LDLAPILRAAGLLGTNSVSFSQASGNMGTNPPTMTRVPGPIGPNTGPSSRGLGLPGPN
                     PSPMSRAPGPMGPNSAHFSRPGGPMGVNAGVFPRGTGSGGLNPNAFSQSSGTLASNPG
                     TFQRSAGLQGSNQAVFPRASGPLGPNPANFPRATGLQGPSPAAFPRSAGPLGPGQVAF
                     PRSAAGHLGSSPAGPVGINPAPFARPTGTLGLNPASFPRMNGPVGKTLVPFPRVGSLP
                     GSNPAAFPRPGGPMAAMYPNGMLPP"
     regulatory      2709..2714
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Derpc"
                     /gene_synonym="Gm50241"
                     /note="hexamer: AATAAA"
     polyA_site      2727
                     /gene="Derpc"
                     /gene_synonym="Gm50241"
                     /note="major polyA site"
ORIGIN      
        1 gcaggcaatg ctcgcggcgg cggcgacggc ggcgggaggt tcggttgtcg cccgttggcc
       61 gcgcggcgcc gcgctcggcg gccgccattg cagggaatcc ctgtgctgat cgtgggccat
      121 catatcctgt atgggaaaac catccacctg gagaaacctt ttgcagtcct tgtcaaacac
      181 actcctggga agcaggactg tgatgagccc ggtcgaggga ctggcaccca gtacttggtg
      241 acagcactca tcaaaaacaa gatccttttc aaaactcgcc ccaagcctat tatcaccaac
      301 gtccccaaga aagtatgaaa gaaccccgga ttttccctag agagcgacca actccttgga
      361 ctcgtgctcc attgccacct cgaggacggc tggacggagg gcctgttatg aacgcaggcc
      421 acccaatggg tgtgaactca gatcctttcc ttatggcagc aggttctctt ggtggaaacc
      481 tggctccatt tccaaggaat gcagctcctt ttcagaatcc atcaggctct ttggcgtcaa
      541 acccagcaca ctttgctgct ggtgctcgcg acccaggcat gacttctttc ccaagaggga
      601 tgaatcccac tggcacaggt gcagtttcct tcccaaggcc aggaggcctg ttgggaccag
      661 gaccaggacc aggtttaaac cctagaacag gggctcttcc aggcccaggg cctatgtcta
      721 accccagatt aggagggctt cctggacctg gtcctatggc caacccaagg gcaggcggac
      781 ttctgggagc aagtcctgac cctagaagtg gtggccccat ggtccctgga tgtggaccca
      841 acatgagggc aggtgttttg tcctctggga ctggtcctcc caatcctagg ccagttggcc
      901 tgggtcctgg accaagtcca aatctgagat caagcttttt aggtacaaac ccggccccta
      961 ggtcgggtat gtttccaggc ccaggcctgg gtcccaaccc acgagcatgt ggcttaggac
     1021 caggtcttgg gcccaaccca agagctggtg gcctaggccc aggcccaaat ctggacaaca
     1081 gagcaggtgg cctcttaggt acaggatctg gtcttaactt aagaatggct ggacctcaag
     1141 gcttagatct tgcccccatc ctgagggcag caggtctttt agggacaaat tcagtttctt
     1201 tttcccaggc ttctggaaac atgggcacaa acccgcccac catgacaaga gtacctggcc
     1261 ccataggtcc aaacacaggt cctagctctc gaggacttgg ccttccaggg ccaaatccct
     1321 ctcccatgtc aagggctcct ggccccatgg gtcctaattc agctcatttc tcaagaccag
     1381 gtggccccat gggggtaaat gctggagtct ttccaagggg gacaggatca ggaggactga
     1441 acccaaatgc cttctctcag tcttctggca cattggcctc aaatccaggc acctttcaga
     1501 ggtctgctgg cctccagggc tcaaatcaag cagttttccc aagagcctct gggccactag
     1561 gccccaaccc agctaacttt ccaagggcca ctggcctgca gggtccaagt ccagctgcct
     1621 tcccaaggtc tgctggtcca ttaggcccag gtcaagttgc tttccccagg tcagctgcgg
     1681 ggcacctggg ctcttctcca gcaggccctg tgggtatcaa cccagctcct tttgcaagac
     1741 caacggggac cctgggcctt aacccagctt cctttccaag gatgaatggc cctgtaggta
     1801 agactttggt cccatttcct agggtaggca gcctccctgg ctcaaatcca gctgctttcc
     1861 ccaggccagg gggtccaatg gctgcaatgt acccaaatgg aatgttaccc ccttaaatac
     1921 catttttctt ccagggccac ttttgttatt taagcactgt ggttctgagc tggggctgtc
     1981 tcttagataa aagagtagat atggaagtac agtctgaaga acatagctgg ggctcgagtt
     2041 caaatgaacc ttctttttcc tctgcttttt tcttgactaa aggcaaaatg ttatttgtga
     2101 gccatggact atggcagatg gggtgatcct ggcctcaagg aaaaggctct ctggccttcc
     2161 ggaagcctct gtgcttttgt cccacagctt tctgcccctt gtttcttact agttccttga
     2221 actgttctcg tggacttttc ctcagggata cattggcctg caggtcctag ttccccactc
     2281 accgctggag aattggctcg cttgctgtct agtgacgctg cattggtgag cgggccatgc
     2341 ttcggtaact ctgacccggc tccctggacc tagtcatgtt ctactgccag acctttccct
     2401 gggggcttga acacagaatg ggaggtggac acccacgcca cagacccacc acatttctgc
     2461 ttgactgggc ctgcggctcc tttcttctgg gacttagagg tggacagatt taagcttcct
     2521 ccgatcagcc agctccctcc tcactggtcc tcccaatcaa agaacctcaa aacttaaact
     2581 gcgatggatg ggaagtgggg gggctggggg gggggtggag ggatgaaagg gaaatcactg
     2641 tgctgtgttc agcttgatgt gaaggatggt tggttttcct ccattgtatc ttttcttact
     2701 gtttctttaa taaatgggtg agagggctgc tgctgtcgct ccattttgtt ctgttta
//
