LOCUS       NM_144804               1780 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus DEP domain containing 7 (Depdc7), mRNA.
ACCESSION   NM_144804
VERSION     NM_144804.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1780)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1780)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1780)
  AUTHORS   Lewandowski,J.P., Du,F., Zhang,S., Powell,M.B., Falkenstein,K.N.,
            Ji,H. and Vokes,S.A.
  TITLE     Spatiotemporal regulation of GLI target genes in the mammalian limb
            bud
  JOURNAL   Dev Biol 406 (1), 92-103 (2015)
   PUBMED   26238476
REFERENCE   4  (bases 1 to 1780)
  AUTHORS   Yokoyama,S., Ito,Y., Ueno-Kudoh,H., Shimizu,H., Uchibe,K.,
            Albini,S., Mitsuoka,K., Miyaki,S., Kiso,M., Nagai,A., Hikata,T.,
            Osada,T., Fukuda,N., Yamashita,S., Harada,D., Mezzano,V., Kasai,M.,
            Puri,P.L., Hayashizaki,Y., Okado,H., Hashimoto,M. and Asahara,H.
  TITLE     A systems approach reveals that the myogenesis genome network is
            regulated by the transcriptional repressor RP58
  JOURNAL   Dev Cell 17 (6), 836-848 (2009)
   PUBMED   20059953
REFERENCE   5  (bases 1 to 1780)
  AUTHORS   Evsikov,A.V., Graber,J.H., Brockman,J.M., Hampl,A., Holbrook,A.E.,
            Singh,P., Eppig,J.J., Solter,D. and Knowles,B.B.
  TITLE     Cracking the egg: molecular dynamics and evolutionary aspects of
            the transition from the fully grown oocyte to embryo
  JOURNAL   Genes Dev 20 (19), 2713-2727 (2006)
   PUBMED   17015433
REFERENCE   6  (bases 1 to 1780)
  AUTHORS   Gawin,B., Niederfuhr,A., Schumacher,N., Hummerich,H., Little,P.F.
            and Gessler,M.
  TITLE     A 7.5 Mb sequence-ready PAC contig and gene expression map of human
            chromosome 11p13-p14.1
  JOURNAL   Genome Res 9 (11), 1074-1086 (1999)
   PUBMED   10568747
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            DV647572.1 and AK134830.1.
            
            On Jan 17, 2019 this sequence version replaced NM_144804.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC013499.1, AK134830.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164134, SAMN01164140
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-37                DV647572.1         1-37
            38-1780             AK134830.1         2-1744
FEATURES             Location/Qualifiers
     source          1..1780
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 54.91 cM"
     gene            1..1780
                     /gene="Depdc7"
                     /note="DEP domain containing 7"
                     /db_xref="GeneID:211896"
                     /db_xref="MGI:MGI:2139258"
     exon            1..176
                     /gene="Depdc7"
                     /inference="alignment:Splign:2.1.0"
     CDS             104..1639
                     /gene="Depdc7"
                     /codon_start=1
                     /product="DEP domain-containing protein 7"
                     /protein_id="NP_659053.1"
                     /db_xref="CCDS:CCDS16492.1"
                     /db_xref="GeneID:211896"
                     /db_xref="MGI:MGI:2139258"
                     /translation="MATVREKAAALNLSALHSPAQRPPGFSVAQKPFGATYVWSSIIN
                     TLQTQVEVKKRRHHLKRHNDCFVGSEAVDVIYSHLTQNKFFGDVDIPRAKVVRVCQAL
                     MDYKVFEAVQTRVFGKDKKPTFEDSSCSLYRFTTIPNQDNQLGHENKVHSPSRYSDAS
                     FMSSDIKSDSLEDLWENLSLKPASSPHIHISTRLSPQVINEVWQEETIGRLLQLVDLP
                     FLDSLLKQQEVVPKAPQSKRQPDMVNTSNYLDRGILRAYGDSQEDEWISAAIDCLEYL
                     PDQMVVDISRNFPEQPDRTDLVKELLFDAIGRYYSTREPLLNHLYDVHNGIAELLVNG
                     KTEMALEATQLFLKLQDSQNREEFRRLLYFMAVAADPSEFKLQEESDNRMVVKRVFSK
                     AIVNNKNVSKGKTDLLVLFLMDHQKDVFKIPAALHKIVSVKLLAIQKGRDPNKDTGYI
                     YCQRIDESEYSSSTKKKTKDQLLSLLKTIDEDSKLSAKEKKKLLGQFRKTHPDIFTEY
                     FGD"
     exon            177..567
                     /gene="Depdc7"
                     /inference="alignment:Splign:2.1.0"
     exon            568..695
                     /gene="Depdc7"
                     /inference="alignment:Splign:2.1.0"
     exon            696..885
                     /gene="Depdc7"
                     /inference="alignment:Splign:2.1.0"
     exon            886..1097
                     /gene="Depdc7"
                     /inference="alignment:Splign:2.1.0"
     exon            1098..1240
                     /gene="Depdc7"
                     /inference="alignment:Splign:2.1.0"
     exon            1241..1366
                     /gene="Depdc7"
                     /inference="alignment:Splign:2.1.0"
     exon            1367..1445
                     /gene="Depdc7"
                     /inference="alignment:Splign:2.1.0"
     exon            1446..1780
                     /gene="Depdc7"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccccgctccc cgggagttaa cccgaggctt cggcgcgggc gcgcagtctg tggagcagcg
       61 gcagcagcgg cggcgcgggc acggagtcca gcccgccgct gacatggcca cggttcgaga
      121 gaaggcggcg gcgctgaacc tgtcggctct gcacagccct gcacagagac ctccgggttt
      181 cagtgtggcc cagaagccat tcggagccac gtacgtgtgg agcagcatta taaacaccct
      241 tcaaacccag gtggaagtga agaagcgaag gcaccactta aaacggcaca acgactgctt
      301 cgtcggctcg gaagccgtgg atgtcattta ctcccactta actcagaata aattctttgg
      361 tgatgtcgat attcctcggg ccaaagtggt gcgagtgtgt caggcactta tggactacaa
      421 agtatttgaa gccgttcaaa ctagagtctt tggaaaggac aagaagccta catttgaaga
      481 tagcagttgc agcctttata gattcacaac aatacctaat caggataatc agttaggcca
      541 tgagaacaaa gtgcattcgc cttccaggta ctcagatgca tcgtttatgt catctgatat
      601 caagtcggac agtttggagg acctgtggga gaacctgagt ctaaagcctg ccagctcccc
      661 tcacatacat atctctacca ggctctctcc tcaagttatc aatgaagtat ggcaagagga
      721 gacgattgga cggctgctac aacttgtcga ccttccattt cttgactcct tactcaaaca
      781 gcaagaggtc gtacctaaag cccctcagtc taagagacag cctgacatgg tcaacaccag
      841 caactatctg gatcgaggaa ttctcagggc ctatggtgac tctcaggaag atgaatggat
      901 ctctgcagcc atcgactgct tggaatacct tcccgaccag atggttgtgg atataagcag
      961 gaactttcct gagcaaccag acagaacaga cttagtgaag gaacttctgt ttgacgctat
     1021 tggcagatat tatagtacta gggagcctct gttgaaccac ctgtatgatg ttcataatgg
     1081 gatagcagag ctcctggtaa atgggaagac ggaaatggcg ttagaagcca cgcagctgtt
     1141 tctgaagctt caggactccc agaacaggga ggagtttaga cggctgcttt acttcatggc
     1201 tgttgcagca gatccttcgg aatttaaatt acaggaagaa agtgacaatc ggatggtagt
     1261 gaaaagggta ttctcaaaag ctatcgtcaa caataaaaat gtatccaaag gcaaaaccga
     1321 tcttcttgtg ctcttcttaa tggatcacca aaaagatgtt ttcaagattc ctgcagctct
     1381 acataaaatt gttagtgtta agcttctggc catacaaaaa ggaagagatc ctaataaaga
     1441 cacaggctat atttattgcc agagaattga tgaaagtgag tattctagca gtacaaagaa
     1501 gaaaaccaaa gatcaactgt tgagcttact aaagactatt gatgaggatt caaaactctc
     1561 tgccaaagag aagaagaaac tgctaggcca atttcgtaag actcacccag acatcttcac
     1621 tgagtatttt ggagactgag tttctaatgt ctgtgtatgt gtattgtatt ttaagggcag
     1681 attatgtagc ctaaagaaat tttaagcttg gatgtctaaa tatgaagttg tacatttttg
     1741 aagttgtatt taataaaaaa atttttatat gtgtcaaaaa
//
