LOCUS       NM_001356375            6742 bp    mRNA    linear   ROD 06-JUN-2024
DEFINITION  Mus musculus DENN domain containing 11 (Dennd11), mRNA.
ACCESSION   NM_001356375 XM_006506138
VERSION     NM_001356375.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 6742)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6742)
  AUTHORS   Okazaki,N., Kikuno,R., Ohara,R., Inamoto,S., Aizawa,H., Yuasa,S.,
            Nakajima,D., Nagase,T., Ohara,O. and Koga,H.
  TITLE     Prediction of the coding sequences of mouse homologues of KIAA
            gene: II. The complete nucleotide sequences of 400 mouse
            KIAA-homologous cDNAs identified by screening of terminal sequences
            of cDNA clones randomly sampled from size-fractionated libraries
  JOURNAL   DNA Res 10 (1), 35-48 (2003)
   PUBMED   12693553
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC153728.1.
            
            On Sep 30, 2017 this sequence version replaced XM_006506138.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK147402.1, ERR3363658.5323969.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164138, SAMN01164141
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-278               AC153728.1         11273-11550
            279-378             AC153728.1         23585-23684
            379-537             AC153728.1         24524-24682
            538-691             AC153728.1         28763-28916
            692-830             AC153728.1         35664-35802
            831-962             AC153728.1         37935-38066
            963-1113            AC153728.1         38199-38349
            1114-1182           AC153728.1         39071-39139
            1183-6742           AC153728.1         40474-46033
FEATURES             Location/Qualifiers
     source          1..6742
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="6"
                     /map="6 18.82 cM"
     gene            1..6742
                     /gene="Dennd11"
                     /gene_synonym="E330009J07Rik; Lchn; mKIAA1147"
                     /note="DENN domain containing 11"
                     /db_xref="GeneID:243780"
                     /db_xref="MGI:MGI:2444256"
     exon            1..278
                     /gene="Dennd11"
                     /gene_synonym="E330009J07Rik; Lchn; mKIAA1147"
                     /inference="alignment:Splign:2.1.0"
     CDS             11..1378
                     /gene="Dennd11"
                     /gene_synonym="E330009J07Rik; Lchn; mKIAA1147"
                     /note="protein LCHN"
                     /codon_start=1
                     /product="DENN domain-containing protein 11"
                     /protein_id="NP_001343304.1"
                     /db_xref="CCDS:CCDS90040.1"
                     /db_xref="GeneID:243780"
                     /db_xref="MGI:MGI:2444256"
                     /translation="MVEQGDAAPLLRWAEGPAVSVPQDPALQAGGWVRGGSGEGRVAA
                     EAPRRREPDEPAPPEVLLQPGRLELGDVEEDQVVAVFVVTFDPRSGNMVEWCLPQDID
                     LEGVEFKSMASGSHKVQSDFIYFRKGPFFGLACFANMPVESELERGARMKSVGILSPS
                     YTLLYRYMHFLENQVRHQLEMPGHYSHLAAFYEDKKGVLHAGPGRGGSLPPVYWLPSI
                     HRYMYPEMKITHPAGCMSQFIKFFGEQILILWKFALLRKRILIFSPPPVGVVCYRVYC
                     CCCLANVSLPGIGGTIPESKPFFYVNVADIESLEVEVSYVACTTEKIFEEKRELYDVY
                     VDNQNVKTHHDHLQPLLKINSADREKYRRLNEQRQMLLYSQEVEGDYSPCEEDLFVLF
                     FLEQNNRIFQTLLEVSASQDKTLTAEHARGMGLDPQGDRSFLMDLLEAYGIDVMLVID
                     NPCCP"
     exon            279..378
                     /gene="Dennd11"
                     /gene_synonym="E330009J07Rik; Lchn; mKIAA1147"
                     /inference="alignment:Splign:2.1.0"
     exon            379..537
                     /gene="Dennd11"
                     /gene_synonym="E330009J07Rik; Lchn; mKIAA1147"
                     /inference="alignment:Splign:2.1.0"
     exon            538..691
                     /gene="Dennd11"
                     /gene_synonym="E330009J07Rik; Lchn; mKIAA1147"
                     /inference="alignment:Splign:2.1.0"
     exon            692..830
                     /gene="Dennd11"
                     /gene_synonym="E330009J07Rik; Lchn; mKIAA1147"
                     /inference="alignment:Splign:2.1.0"
     exon            831..962
                     /gene="Dennd11"
                     /gene_synonym="E330009J07Rik; Lchn; mKIAA1147"
                     /inference="alignment:Splign:2.1.0"
     exon            963..1113
                     /gene="Dennd11"
                     /gene_synonym="E330009J07Rik; Lchn; mKIAA1147"
                     /inference="alignment:Splign:2.1.0"
     exon            1114..1182
                     /gene="Dennd11"
                     /gene_synonym="E330009J07Rik; Lchn; mKIAA1147"
                     /inference="alignment:Splign:2.1.0"
     exon            1183..6742
                     /gene="Dennd11"
                     /gene_synonym="E330009J07Rik; Lchn; mKIAA1147"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1730..1735
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Dennd11"
                     /gene_synonym="E330009J07Rik; Lchn; mKIAA1147"
                     /note="hexamer: AATAAG"
     polyA_site      1754
                     /gene="Dennd11"
                     /gene_synonym="E330009J07Rik; Lchn; mKIAA1147"
     regulatory      6719..6724
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Dennd11"
                     /gene_synonym="E330009J07Rik; Lchn; mKIAA1147"
                     /note="hexamer: ATTAAA"
     polyA_site      6742
                     /gene="Dennd11"
                     /gene_synonym="E330009J07Rik; Lchn; mKIAA1147"
                     /note="major polyA site"
ORIGIN      
        1 tcgcctcgcc atggtggagc agggagacgc ggcgccgctg ctgcgctggg ccgagggccc
       61 cgcggtctct gtgccgcagg accccgcgct gcaagctgga ggatgggtcc ggggcggcag
      121 tggggagggc cgagtggccg cggaggcgcc ccgaaggcgg gaacccgacg agccagctcc
      181 ccccgaagtg ctgctgcagc cggggcgcct agagctaggc gacgtagagg aggaccaggt
      241 ggtggccgtg ttcgtggtca ccttcgatcc tcgctccgga aacatggtag aatggtgctt
      301 acctcaagat attgaccttg aaggtgttga gttcaagtct atggccagcg ggtcccataa
      361 agttcagtct gatttcatct attttcggaa gggtcccttc tttggcctgg cctgctttgc
      421 caacatgcct gtggagagcg agctggagcg aggcgctcgg atgaagtctg tgggcatcct
      481 ctctccatcc tacaccctgc tctaccgcta catgcacttt ttggagaacc aggttcgaca
      541 ccagctggag atgccaggac attactctca tctggctgca ttctatgaag acaagaaagg
      601 ggtgctccac gctggccccg ggaggggtgg cagcttgcca cctgtctact ggttgccttc
      661 tattcaccgc tatatgtatc cagagatgaa gatcacacac cctgctggct gtatgtctca
      721 gtttattaag ttctttggag aacagatcct cattctttgg aagttcgcct tacttcgaaa
      781 gcgcattctg atattttctc ccccacctgt gggtgtcgtg tgctatagag tgtactgttg
      841 ctgttgtctg gccaatgtgt ccctgcctgg cattgggggc accatccctg agtccaagcc
      901 tttcttctat gtgaacgtgg ctgacattga gagcctggaa gttgaggtgt cctatgtagc
      961 ctgtaccaca gagaagatat ttgaagagaa gcgtgagctg tacgatgtgt acgtggacaa
     1021 ccagaatgta aagacacacc atgaccacct gcaacccctg ctgaagatca acagtgcaga
     1081 cagggagaag taccgtcggc tcaatgagca gaggcagatg ctgttgtact cccaggaagt
     1141 tgaaggagac tacagcccat gtgaagagga cctctttgtg ctgtttttcc tagagcagaa
     1201 caaccggatt tttcagactc tgttggaggt gtcagccagc caagataaaa ctctaacagc
     1261 ggagcatgcc cgaggcatgg gactggatcc ccagggagac aggagctttc tcatggacct
     1321 gctggaggcc tacggcatcg acgtcatgct ggtcattgac aacccctgtt gtccttagga
     1381 agcatgatag gactggtggt gagactcact cgtgtagggt gacaggagcc tggagtgcac
     1441 cccaggccct cagcagcttc agttttaatt aagttgacac aaaggactgt ttatactttc
     1501 caacacatga aacttttgcc attttctttc tgagcctcag ccctggggct gggatggagc
     1561 tggggtgagg ctgcctgggc ttgtagcctt tggttggacg tgggaatcta ctgtcatcca
     1621 ctgctgcttc tttgggttta gtcttaggag ttctgtgagt cagagtcaga ctctgggatg
     1681 aactgttcag aaaacctgta tgtcttcgtt tgcctttgtt gcatatgaaa ataagataac
     1741 tatgtgtccc cgtatggcct tagatgttca tctgcttaaa gacagaaact aattagatga
     1801 tctttccacc aagttcaagg agtcaagtta ggatcgccta gtcgtgagag ggcaagtctg
     1861 aaccttctct gttcgatgga gggaccacaa aggaggaaag aattcttgaa atccttccta
     1921 aagtaagcta tgagttatag catccaccca ccctccccac tgcctcccag tcctcttggt
     1981 cagtgctgaa gggtggtgct ggccctgagc ttatagactc ataagcattg aatatcctct
     2041 tgaactaact aacaggttca aataggtaag ggaagaagtt tccagtttct ctaagagctc
     2101 tgtggaggga tggtacacag tcagtcctac agcagatact tctgatgaat tctgaaatat
     2161 agccagggcc caagctggtt aactcaggtt gcaatgtgat gttaacaggt ctctttacca
     2221 atgtgaaact cccacagaca tctctgaagt agagacaaca ttccttaggc taagcaagga
     2281 acctaacaga tttgtcaggg aaaacataac agtgcctccc atccaagaga atggctggaa
     2341 atcccagact aacaaccatg cctgcttctt ttggtctgtg atgggactgc ggtcactttg
     2401 ttctttgggg ctgggatact ttggactcat gcactatgtt ggagggcagc tgtgaaccat
     2461 attcagaaag ccatgtgaat agctagctag ccagccatca gacatccatg tctgtagcta
     2521 aagagcagcc aggttgatgc ccacagcaga gagaacttca aagagagggt ccatgcctct
     2581 tagttctggg ttcttgaggc ttattgctta gctcaagaat gttcactgta gctccttgat
     2641 aaaaaatcca agagtaaaga ggttggtgtg tgtgtgagaa tgccaacaga cactgatgag
     2701 tcagggtaac gtcttttctg taaatatata agtttaggca ctgacataaa ctgttccatc
     2761 taattgattt tttctcctct gcagtgtggg tttagccatc attccagtaa cacaatgttt
     2821 acagaaaaca gctgtgctca gtggctgaag tttctcctgc tttgtcctta gggctacctt
     2881 ttcctcttgc cccagggctg agcagtgggg actacctgat gctgatggag caacaacttc
     2941 ccttggtcgc taaagctcaa agtcaggggt agatagccag agataggagc ttctgaggga
     3001 ctggaagccc ctcttcagaa ctcattgaag agaggctaag caattgcatc cacagaccta
     3061 acagatttga cagggaaaat ataacagtgc ctcccatcca agagaatggc tggaaatccc
     3121 agatgaacaa ccatgcctgc ttcttttggt ctgtgatggg actgcatttg tttgttcttt
     3181 ggggctggga tactttggac ttcattcaaa tgaagccccc gtttctgaga acctccctag
     3241 agccttctgt atgccagcac tgtttgctgt gctgttgagg cagcaagctg agaactgcta
     3301 atgaaggtga gaaaggttgt ctgttatcaa cttgggcttt atgggttctt tttaactgag
     3361 cagctgtgtt aggtcttagg ctctgggctt gctagccccc agaagcagaa cttcttgttc
     3421 aacatctcct tcagtctttc cttaccttgc cagtttcctc atagggccag aacatggcac
     3481 aggtgtctgt gtagccgaca gtgtgtatgt cagcacccct tgtacccttt gccccctttt
     3541 atcagctgca gagtaagtct tgagatgtga gccacatcac tatgaagtca taccagactg
     3601 ctccccccgt ggcagtgggc agatgcaagt ctgcataata ttctgtgagt ttcctatgaa
     3661 gggaagtagt ttgtgtagaa ctctatagga atctctttac agtgacagca gaagctagta
     3721 gccacaggat gtgcttgccc gtcactcttg aaatactttc tgaaaaccca tctggcttta
     3781 tttggaagaa gttagttcac atccttcata gctttctgac cattagcaga gacaggcatt
     3841 tttctaaaca ctggcctcta ggaagagggc taaaatctca gatgtgggtc ctgccattct
     3901 gctggtggct ctcatcagac ccctgccaga gctggcagaa cccttctggg gagcactaat
     3961 cccctcctgt accatgctgg gaaccatgtg ttaacctgga agcacttgct gacttgcatt
     4021 gctggctatt cagtcatttt taaggtagaa gagatttcca atggtaacca tcttcagggg
     4081 gcccgacact ggggttttgg atacgtggac atccatgtta agtacaacat actgagtaga
     4141 acaagagcct cttaaagtgg gtgtttgcag ttttgtcagc agatggtaat gcccagctag
     4201 ttgttgcctg gctcaggact ctttccttgg aagcagtaaa aatagcagag cttatctcct
     4261 accagtctat aaaggaaggc caagtcattg cctggtatta gtgttagctt taaacatgaa
     4321 gccttccctg tgctgggcat ggatccaggc caatgttggt gtcctacctg gggcccatat
     4381 ggttcaatca gttaggagta caatgcgaca ggaggtgttt gcctcccata cctcccaccc
     4441 accctggctt ctggagacga gctggttaca ttgctgggat agaagttagg ataagaacct
     4501 gaaactataa cttaccttgc tggaaaccac ggaaaggtga gagtgacgct cagatacaat
     4561 agtgccagat gcttcatggg aaggtttgct tacacaatta cctaatatat cttagctaga
     4621 taataaggta aattaaaccg tggctaattg ctgccttcat tctggaggca agggggacga
     4681 acctcctgtc ttgaggaact gaaagcctat caatgcagag aggtaaaatg gacttaccct
     4741 tccacagaag cttttgggga gacttctcca agagtgctag tgaattacct ggtggtagaa
     4801 gtcagcctcc tagagatgca gggacttggg aactgtcttt tcccctaaac tgcacagcca
     4861 gagagtggac tgagatgctt cctccaagtc cagtgcgatg gtccttgcag aggtaaagaa
     4921 gggctatggg gtatgggtga acagagctgt aagataacgc tgggtctcac agtgaacatg
     4981 ccttattatg agaagagcat catccattag gacgtcttcc ccttaggctt ccaggctaat
     5041 aggctaatag gctgtccagc atcccatctc tccctcatag cgcatagttc tgcccatagc
     5101 ttaccttagc aagcccaatt tcatcccttc tcattttatg aaaacccttt tcagtcaggt
     5161 aggggaaagg aaggagttaa gggctccctc taaacccaag tcatgggctt tgactatgcc
     5221 actttatagc taatatacct ctgttcccag gagctactga ggtacccagt gtggtgggga
     5281 aaagacggtg aattaaggta atgcttttcc tatgggaaat ggaagtttat ttttatacca
     5341 gtgttactga atggtgaatt aagtactgaa gcattggaaa ggaattgcaa agttatcatc
     5401 taaacagcaa cgggcagctt ttgtggctta atagcagtgg aggcccttag acatgtcgct
     5461 gtctgtgaca gggttttgaa gcatgagcac acactctctg ctgtattatt tcagcagcca
     5521 ttacaggaga gaaagtcaac tggcctggca agatgagagg gacagtgacc ttgggcaaat
     5581 ctgtagaaca gaagtgcgca aatagccttt caatgactag tccttcttga tcaagagaga
     5641 gagaggggaa tgggaggtag tctgctgcct ggcactttaa ttcattttag tggctggaag
     5701 ttgggtgata ctgtaaaatt agaaaaggaa taggactttt tttggtgcta tatagagaaa
     5761 tgaaaatggg gaggaataaa actcctttta gagattcctc tagaacgtca gcatggcgct
     5821 gcctctcaga accatgttga cttaaattct gacaggttta cagcagaggg tttgtttgca
     5881 tttgcagcag gtgcctgtgt ggtttgctga gtttactttg cttcttaatg atactggggc
     5941 tcactgggac agggcagggt tttataaatt gtgcatagat ggagctgcaa agtgaaaagc
     6001 ccataaaaaa gaaaatatat gtaactgaca ttgtatctgg gtaaattaag caaggagagt
     6061 ttttttacat atatatatat atatgaaagt caggcaaacc caaagttcat tttccttgcc
     6121 cttcagaaat gccatcagcc atgagaaatg ggggattctg tcctcttgaa ctgcctgcat
     6181 aagtggctgc caggctttgg gtcagagata aacaaaatca acttcattta tttgcccaaa
     6241 acttggataa atttttgcat aagtctagaa tataatcttt cctgaaaaaa agaagtcatg
     6301 gtaatcaagg aaatctgttt ttcctagttt tttttttttt ttaaacatag tgtccctgtt
     6361 gccttaaatg taaaaaccta ttttgagaaa caaccccagt ctaaaagtta tagcaataaa
     6421 agaaccctaa tctatttttg tttcaagtct ttacctcatg acaaagtcag aaggataatt
     6481 ggtaagtttt gctctgggta ctactgcaaa ccgatgtatc ctttctgtgt cctcaatgga
     6541 gtattattta cagacctgaa ggaaggtggg cttaacccca aggctaagtg taaatgtttc
     6601 ttgaattgat tctttctgtg gtacaagtta acacctgtgt atatcatatc tgtatatatc
     6661 tgaaccaagt tatgtgcaga ggttgataat aactatattt acaaaagaaa tttttacaat
     6721 taaagttcac attttaacat ga
//
