LOCUS       NM_139219                331 bp    mRNA    linear   ROD 13-JUN-2024
DEFINITION  Mus musculus defensin beta 9 (Defb9), mRNA.
ACCESSION   NM_139219
VERSION     NM_139219.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 331)
  AUTHORS   Amid,C., Rehaume,L.M., Brown,K.L., Gilbert,J.G., Dougan,G.,
            Hancock,R.E. and Harrow,J.L.
  TITLE     Manual annotation and analysis of the defensin gene cluster in the
            C57BL/6J mouse reference genome
  JOURNAL   BMC Genomics 10, 606 (2009)
   PUBMED   20003482
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 331)
  AUTHORS   Morrison,G.M., Semple,C.A., Kilanowski,F.M., Hill,R.E. and
            Dorin,J.R.
  TITLE     Signal sequence conservation and mature peptide divergence within
            subgroups of the murine beta-defensin gene family
  JOURNAL   Mol Biol Evol 20 (3), 460-470 (2003)
   PUBMED   12644567
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL590619.9.
            
            On Sep 2, 2022 this sequence version replaced NM_139219.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BM936051.1, BE991400.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849381, SAMN00849384
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-109               AL590619.9         147200-147308
            110-331             AL590619.9         150708-150929
FEATURES             Location/Qualifiers
     source          1..331
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 10.54 cM"
     gene            1..331
                     /gene="Defb9"
                     /gene_synonym="BD-9"
                     /note="defensin beta 9"
                     /db_xref="GeneID:246079"
                     /db_xref="MGI:MGI:2179198"
     exon            1..109
                     /gene="Defb9"
                     /gene_synonym="BD-9"
                     /inference="alignment:Splign:2.1.0"
     CDS             49..252
                     /gene="Defb9"
                     /gene_synonym="BD-9"
                     /note="beta-defensin 9"
                     /codon_start=1
                     /product="beta-defensin 9 precursor"
                     /protein_id="NP_631965.1"
                     /db_xref="CCDS:CCDS40286.1"
                     /db_xref="GeneID:246079"
                     /db_xref="MGI:MGI:2179198"
                     /translation="MRTLCSLLLICCLLFSYTTPAANSIIGVSEMERCHKKGGYCYFY
                     CFSSHKKIGSCFPEWPRCCKNIK"
     exon            110..331
                     /gene="Defb9"
                     /gene_synonym="BD-9"
                     /inference="alignment:Splign:2.1.0"
     regulatory      303..308
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Defb9"
                     /gene_synonym="BD-9"
                     /note="hexamer: AATAAA"
     polyA_site      331
                     /gene="Defb9"
                     /gene_synonym="BD-9"
                     /note="major polyA site"
ORIGIN      
        1 agtcctgttg tggtcctctc tggagtctga gtgctccttc taccagccat gaggactctc
       61 tgctctctgc tgctgatatg ctgcctcctt ttctcatata ccaccccagc tgccaactct
      121 ataatcggtg tatcagaaat ggaacggtgc cacaagaaag gagggtactg ttatttttat
      181 tgtttcagtt ctcacaaaaa aattggtagc tgttttccag agtggccaag gtgctgcaag
      241 aacataaagt gacttgaagg aagtatatgg aagtcaagtg acagatgtgt aattgatgtt
      301 ttaataaagg aaacattttt tttaagttta a
//
