LOCUS       NM_183038                364 bp    mRNA    linear   ROD 11-OCT-2024
DEFINITION  Mus musculus defensin beta 39 (Defb39), mRNA.
ACCESSION   NM_183038
VERSION     NM_183038.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 364)
  AUTHORS   Amid,C., Rehaume,L.M., Brown,K.L., Gilbert,J.G., Dougan,G.,
            Hancock,R.E. and Harrow,J.L.
  TITLE     Manual annotation and analysis of the defensin gene cluster in the
            C57BL/6J mouse reference genome
  JOURNAL   BMC Genomics 10, 606 (2009)
   PUBMED   20003482
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 364)
  AUTHORS   Zaballos,A., Villares,R., Albar,J.P., Martinez-A,C. and Marquez,G.
  TITLE     Identification on mouse chromosome 8 of new beta-defensin genes
            with regionally specific expression in the male reproductive organ
  JOURNAL   J Biol Chem 279 (13), 12421-12426 (2004)
   PUBMED   14718547
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC119161.8.
            
            On Jun 19, 2019 this sequence version replaced NM_183038.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AJ575425.1, AJ578472.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849381 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-172               AC119161.8         22928-23099
            173-364             AC119161.8         34833-35024
FEATURES             Location/Qualifiers
     source          1..364
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 10.35 cM"
     gene            1..364
                     /gene="Defb39"
                     /gene_synonym="BD-39"
                     /note="defensin beta 39"
                     /db_xref="GeneID:360214"
                     /db_xref="MGI:MGI:2672974"
     exon            1..172
                     /gene="Defb39"
                     /gene_synonym="BD-39"
                     /inference="alignment:Splign:2.1.0"
     CDS             112..336
                     /gene="Defb39"
                     /gene_synonym="BD-39"
                     /note="beta-defensin 39"
                     /codon_start=1
                     /product="beta-defensin 39 precursor"
                     /protein_id="NP_898859.2"
                     /db_xref="CCDS:CCDS22130.1"
                     /db_xref="GeneID:360214"
                     /db_xref="MGI:MGI:2672974"
                     /translation="MKISYFLLLILSLGSSQINPVSGDDSIQCFQKNNTCHTNQCPYF
                     QDEIGTCYDRRGKCCQKRLLHIRVPRKKKV"
     exon            173..364
                     /gene="Defb39"
                     /gene_synonym="BD-39"
                     /inference="alignment:Splign:2.1.0"
     regulatory      345..350
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Defb39"
                     /gene_synonym="BD-39"
                     /note="hexamer: AATAAA"
     polyA_site      364
                     /gene="Defb39"
                     /gene_synonym="BD-39"
                     /note="major polyA site"
ORIGIN      
        1 acttacttct gcctctctat tagaacagat gcactctgtg ctctgggttc atctttgaac
       61 taagctttct aggtctggtc tggtctttaa tcaacttggt gtgcagcaat catgaagatc
      121 tcctactttc tgctgctgat cctctctcta ggcagctccc agatcaaccc agtttctggt
      181 gacgattcaa tacaatgttt tcaaaagaat aacacctgtc acaccaacca atgcccatat
      241 tttcaagatg agatcggcac gtgttatgac agaagaggca agtgttgcca aaaacgcctt
      301 ttgcatatca gagttccaag gaagaagaag gtgtaaccag ttataataaa ggaaaacacc
      361 ctga
//
