LOCUS       NM_183036                291 bp    mRNA    linear   ROD 09-JUN-2024
DEFINITION  Mus musculus defensin beta 38 (Defb38), mRNA.
ACCESSION   NM_183036
VERSION     NM_183036.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 291)
  AUTHORS   Amid,C., Rehaume,L.M., Brown,K.L., Gilbert,J.G., Dougan,G.,
            Hancock,R.E. and Harrow,J.L.
  TITLE     Manual annotation and analysis of the defensin gene cluster in the
            C57BL/6J mouse reference genome
  JOURNAL   BMC Genomics 10, 606 (2009)
   PUBMED   20003482
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 291)
  AUTHORS   Zaballos,A., Villares,R., Albar,J.P., Martinez-A,C. and Marquez,G.
  TITLE     Identification on mouse chromosome 8 of new beta-defensin genes
            with regionally specific expression in the male reproductive organ
  JOURNAL   J Biol Chem 279 (13), 12421-12426 (2004)
   PUBMED   14718547
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC119161.8.
            
            On Jun 19, 2019 this sequence version replaced NM_183036.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AJ575424.1, BC125388.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849381, SAMN00849384
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-100               AC119161.8         61281-61380
            101-291             AC119161.8         64255-64445
FEATURES             Location/Qualifiers
     source          1..291
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 10.35 cM"
     gene            1..291
                     /gene="Defb38"
                     /gene_synonym="BD-38"
                     /note="defensin beta 38"
                     /db_xref="GeneID:360212"
                     /db_xref="MGI:MGI:2672972"
     exon            1..100
                     /gene="Defb38"
                     /gene_synonym="BD-38"
                     /inference="alignment:Splign:2.1.0"
     CDS             40..231
                     /gene="Defb38"
                     /gene_synonym="BD-38"
                     /note="beta-defensin 38"
                     /codon_start=1
                     /product="beta-defensin 38 precursor"
                     /protein_id="NP_898857.1"
                     /db_xref="CCDS:CCDS40248.1"
                     /db_xref="GeneID:360212"
                     /db_xref="MGI:MGI:2672972"
                     /translation="MKISCFLLLILSLYFFQINQAIGPDTKKCVQRKNACHYFECPWL
                     YYSVGTCYKGKGKCCQKRY"
     exon            101..291
                     /gene="Defb38"
                     /gene_synonym="BD-38"
                     /inference="alignment:Splign:2.1.0"
     regulatory      272..277
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Defb38"
                     /gene_synonym="BD-38"
                     /note="hexamer: AATAAA"
     polyA_site      291
                     /gene="Defb38"
                     /gene_synonym="BD-38"
                     /note="major polyA site"
ORIGIN      
        1 ctctggcctt gtctttaatc tgctttgtgt gcagcaatca tgaagatctc ctgctttctg
       61 ctactgatcc tctctctata tttcttccag atcaaccaag ctattggccc tgacacaaaa
      121 aaatgtgtcc aaaggaaaaa tgcctgtcac tactttgaat gcccatggtt gtattattct
      181 gttggcacct gttataaagg aaaaggcaag tgttgccaaa aacgctatta gtataccaga
      241 agtcacatga acaatgtgta atcattgctt taataaaaga aaacacgcta a
//
