LOCUS       NM_001177518             463 bp    mRNA    linear   ROD 06-AUG-2023
DEFINITION  Mus musculus defensin, alpha, 42 (Defa42), mRNA.
ACCESSION   NM_001177518 XM_909689 XM_980383
VERSION     NM_001177518.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 463)
  AUTHORS   Amid C, Rehaume LM, Brown KL, Gilbert JG, Dougan G, Hancock RE and
            Harrow JL.
  TITLE     Manual annotation and analysis of the defensin gene cluster in the
            C57BL/6J mouse reference genome
  JOURNAL   BMC Genomics 10, 606 (2009)
   PUBMED   20003482
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC239604.3.
            
            On or before Apr 15, 2010 this sequence version replaced
            XM_909689.2, XM_980383.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN00849377,
                              SAMN00849380 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-172               AC239604.3         103177-103348
            173-463             AC239604.3         103977-104267
FEATURES             Location/Qualifiers
     source          1..463
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 10.35 cM"
     gene            1..463
                     /gene="Defa42"
                     /gene_synonym="EG665927; Gm7849"
                     /note="defensin, alpha, 42"
                     /db_xref="GeneID:665927"
                     /db_xref="MGI:MGI:3645033"
     CDS             1..351
                     /gene="Defa42"
                     /gene_synonym="EG665927; Gm7849"
                     /note="novel defensin-related cryptidin"
                     /codon_start=1
                     /product="alpha-defensin 42 precursor"
                     /protein_id="NP_001170989.1"
                     /db_xref="CCDS:CCDS52508.1"
                     /db_xref="GeneID:665927"
                     /db_xref="MGI:MGI:3645033"
                     /translation="MKTLVLLSALALLALQVQADPIQNTDEETKTQEQPGEEDQAVSV
                     SFGGTEGSALQDVAQRRFPWCRKCRVCQKCEVCQKCPVCPTCPQCPKQPLCKERQNKT
                     AITTQAPNTHHKGC"
     exon            1..172
                     /gene="Defa42"
                     /gene_synonym="EG665927; Gm7849"
                     /inference="alignment:Splign:2.1.0"
     exon            173..463
                     /gene="Defa42"
                     /gene_synonym="EG665927; Gm7849"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgaagacac ttgtcctcct ctctgccctt gccctgctgg ccttacaggt ccaggctgat
       61 cctatccaaa acacagatga agagactaaa actcaggagc agccagggga agaggaccag
      121 gctgtttctg tctcctttgg aggcacagaa ggctctgctc ttcaagatgt agcccaaaga
      181 agatttccgt ggtgccggaa gtgccgagtg tgccagaagt gcgaagtgtg ccagaagtgc
      241 cctgtgtgcc cgacatgccc ccagtgccca aagcagccat tgtgcaaaga aaggcaaaat
      301 aaaactgcta tcaccaccca agctccaaat acacatcata aaggctgttg agctgaatgt
      361 ggaatctggg ttgagatgac catttgcctt tggtctccac gatctctttg tgcttagcct
      421 caattgcaat tccttctctc ataaactcct tgctgaaaaa tca
//
