LOCUS       NM_001177486             282 bp    mRNA    linear   ROD 06-AUG-2023
DEFINITION  Mus musculus defensin, alpha, 41 (Defa41), mRNA.
ACCESSION   NM_001177486 XM_001476957
VERSION     NM_001177486.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 282)
  AUTHORS   Amid C, Rehaume LM, Brown KL, Gilbert JG, Dougan G, Hancock RE and
            Harrow JL.
  TITLE     Manual annotation and analysis of the defensin gene cluster in the
            C57BL/6J mouse reference genome
  JOURNAL   BMC Genomics 10, 606 (2009)
   PUBMED   20003482
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC129174.3.
            
            On Apr 11, 2010 this sequence version replaced XM_001476957.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN00849377,
                              SAMN00849378 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-172               AC129174.3         154368-154539       c
            173-282             AC129174.3         153697-153806       c
FEATURES             Location/Qualifiers
     source          1..282
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 10.35 cM"
     gene            1..282
                     /gene="Defa41"
                     /gene_synonym="Gm15293"
                     /note="defensin, alpha, 41"
                     /db_xref="GeneID:100041759"
                     /db_xref="MGI:MGI:3705230"
     CDS             1..282
                     /gene="Defa41"
                     /gene_synonym="Gm15293"
                     /note="novel defensin-related cryptidin"
                     /codon_start=1
                     /product="uncharacterized protein LOC100041759 precursor"
                     /protein_id="NP_001170957.1"
                     /db_xref="CCDS:CCDS52506.1"
                     /db_xref="GeneID:100041759"
                     /db_xref="MGI:MGI:3705230"
                     /translation="MKTFVLLSALVLLAFQAQADPIHKTDEETNTEEQPGEEDQAVSI
                     SSGGQEGSALHEELSKKLICYCRIRGCKRRECVFGTCRNLFLTFVFCCS"
     exon            1..172
                     /gene="Defa41"
                     /gene_synonym="Gm15293"
                     /inference="alignment:Splign:2.1.0"
     exon            173..282
                     /gene="Defa41"
                     /gene_synonym="Gm15293"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgaagacat ttgtcctcct ctctgccctt gtcctgctgg ccttccaggc ccaggctgat
       61 cctatccaca aaacagatga agagactaat actgaggagc agccagggga agaggaccag
      121 gctgtgtcta tctcctctgg aggccaagaa gggtctgctc ttcatgaaga attgtcaaaa
      181 aagctgatat gctattgtag aataagaggc tgcaaaagaa gagaatgcgt ttttgggacc
      241 tgcagaaatc tttttttaac tttcgtattc tgttgcagct ga
//
