LOCUS       NM_001177487             421 bp    mRNA    linear   ROD 06-AUG-2023
DEFINITION  Mus musculus defensin, alpha, 40 (Defa40), mRNA.
ACCESSION   NM_001177487 XM_001476991
VERSION     NM_001177487.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 421)
  AUTHORS   Amid C, Rehaume LM, Brown KL, Gilbert JG, Dougan G, Hancock RE and
            Harrow JL.
  TITLE     Manual annotation and analysis of the defensin gene cluster in the
            C57BL/6J mouse reference genome
  JOURNAL   BMC Genomics 10, 606 (2009)
   PUBMED   20003482
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC129174.3.
            
            On Jun 19, 2019 this sequence version replaced NM_001177487.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR5189685.218647.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849377, SAMN00849378
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-219               AC129174.3         106210-106428       c
            220-421             AC129174.3         105590-105791       c
FEATURES             Location/Qualifiers
     source          1..421
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 10.35 cM"
     gene            1..421
                     /gene="Defa40"
                     /gene_synonym="Gm15292"
                     /note="defensin, alpha, 40"
                     /db_xref="GeneID:100041787"
                     /db_xref="MGI:MGI:3708769"
     exon            1..219
                     /gene="Defa40"
                     /gene_synonym="Gm15292"
                     /inference="alignment:Splign:2.1.0"
     CDS             48..329
                     /gene="Defa40"
                     /gene_synonym="Gm15292"
                     /note="novel defensin-related cryptidin"
                     /codon_start=1
                     /product="uncharacterized protein LOC100041787 precursor"
                     /protein_id="NP_001170958.1"
                     /db_xref="CCDS:CCDS52507.1"
                     /db_xref="GeneID:100041787"
                     /db_xref="MGI:MGI:3708769"
                     /translation="MKTLVLLSALFLLAFQVQADPIQKTDEETNTEVQPEEEEQAMSV
                     SFGNPEGSDLQEESLRDLGCYCRKRGCTRRERINGTCRKGHLMYTLCCL"
     exon            220..421
                     /gene="Defa40"
                     /gene_synonym="Gm15292"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccacacattg ggctcctgtt ccccaatccc ccaggtgact cccagccatg aagacacttg
       61 tcctcctctc tgcccttttc ctgctggcct tccaagtcca ggctgatcct atccaaaaaa
      121 cagatgaaga gactaatact gaggtgcagc cagaggaaga ggagcaggct atgtctgtct
      181 cctttggaaa tccagaaggc tctgatcttc aagaagaatc gttgagagat ctgggatgct
      241 attgtagaaa aagaggctgc acaagaagag aacgcattaa tgggacctgc agaaagggtc
      301 atttaatgta cacactctgc tgcctctgaa catggagacc ccagaggaca agacttccat
      361 gagcactgag gccactgatg ctggggcctg atgtccactt ctcaataaat tgtccgcagt
      421 a
//
