LOCUS       NM_001007582             500 bp    mRNA    linear   ROD 07-AUG-2023
DEFINITION  Mus musculus defensin, alpha, 39 (Defa39), mRNA.
ACCESSION   NM_001007582 XM_356063
VERSION     NM_001007582.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 500)
  AUTHORS   Archambaud C, Nahori MA, Soubigou G, Becavin C, Laval L, Lechat P,
            Smokvina T, Langella P, Lecuit M and Cossart P.
  TITLE     Impact of lactobacilli on orally acquired listeriosis
  JOURNAL   Proc Natl Acad Sci U S A 109 (41), 16684-16689 (2012)
   PUBMED   23012479
REFERENCE   2  (bases 1 to 500)
  AUTHORS   Amid C, Rehaume LM, Brown KL, Gilbert JG, Dougan G, Hancock RE and
            Harrow JL.
  TITLE     Manual annotation and analysis of the defensin gene cluster in the
            C57BL/6J mouse reference genome
  JOURNAL   BMC Genomics 10, 606 (2009)
   PUBMED   20003482
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 500)
  AUTHORS   Patil A, Hughes AL and Zhang G.
  TITLE     Rapid evolution and diversification of mammalian alpha-defensins as
            revealed by comparative analysis of rodent and primate genes
  JOURNAL   Physiol Genomics 20 (1), 1-11 (2004)
   PUBMED   15494476
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC134533.3 and AK008498.1.
            
            On Sep 2, 2009 this sequence version replaced NM_001007582.2.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BY708386.1, AV066915.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849377, SAMN00849378
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-5                 AC134533.3         106094-106098       c
            6-496               AK008498.1         12-502
            497-500             AC134533.3         104975-104978       c
FEATURES             Location/Qualifiers
     source          1..500
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 10.35 cM"
     gene            1..500
                     /gene="Defa39"
                     /gene_synonym="CRS1C-3; CRS1C-6"
                     /note="defensin, alpha, 39"
                     /db_xref="GeneID:382000"
                     /db_xref="MGI:MGI:3611585"
     exon            1..217
                     /gene="Defa39"
                     /gene_synonym="CRS1C-3; CRS1C-6"
                     /inference="alignment:Splign:2.1.0"
     CDS             46..396
                     /gene="Defa39"
                     /gene_synonym="CRS1C-3; CRS1C-6"
                     /note="novel defensin-related cryptidin"
                     /codon_start=1
                     /product="Alpha-defensin-related sequence 1-like
                     precursor"
                     /protein_id="NP_001007583.1"
                     /db_xref="CCDS:CCDS22156.1"
                     /db_xref="GeneID:382000"
                     /db_xref="MGI:MGI:3611585"
                     /translation="MKTLVLLSALALLAFQVQADPIKNTDEETKTGEQPEEEDQAVSV
                     SFGGTEGSALQYVAQRRFPWCRKCPVCQKCQVCQKCPVCPTCPQCPKLPLCKERQNKS
                     AITTQAPNTQHKGC"
     exon            218..500
                     /gene="Defa39"
                     /gene_synonym="CRS1C-3; CRS1C-6"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acacattgag ctcctgctca ctaatcttcc aggtgactcc cagtcatgaa gacacttgtc
       61 ctcctctctg cccttgccct gctggccttc caggtccagg ctgatcctat caaaaacaca
      121 gatgaagaga ctaaaactgg ggagcagcca gaggaagagg accaggctgt ttctgtctcc
      181 tttggaggca cagaaggctc tgctcttcaa tatgtagccc aaagaaggtt tccgtggtgc
      241 cggaagtgcc cagtgtgcca gaagtgccaa gtgtgccaga agtgccctgt gtgcccgaca
      301 tgcccccagt gcccgaagct gccattgtgc aaagaaaggc aaaataaaag tgcaatcacc
      361 acccaagctc caaatacaca gcataaaggc tgttgagctg aatgtggaat ctggtttgag
      421 atgaccattt gcttttggtc ctcacaatcc cattgtgctt agcctcaatt gcaattcctt
      481 ctctcataaa ctccttgctg
//
