LOCUS       NM_001177528             376 bp    mRNA    linear   ROD 06-AUG-2023
DEFINITION  Mus musculus defensin, alpha, 34 (Defa34), mRNA.
ACCESSION   NM_001177528 XM_001477188
VERSION     NM_001177528.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 376)
  AUTHORS   Amid C, Rehaume LM, Brown KL, Gilbert JG, Dougan G, Hancock RE and
            Harrow JL.
  TITLE     Manual annotation and analysis of the defensin gene cluster in the
            C57BL/6J mouse reference genome
  JOURNAL   BMC Genomics 10, 606 (2009)
   PUBMED   20003482
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC134533.3.
            
            On Apr 15, 2010 this sequence version replaced XM_001477188.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AV063460.1, AV062618.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849377
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-172               AC134533.3         68248-68419
            173-376             AC134533.3         68981-69184
FEATURES             Location/Qualifiers
     source          1..376
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 10.35 cM"
     gene            1..376
                     /gene="Defa34"
                     /gene_synonym="Gm15315"
                     /note="defensin, alpha, 34"
                     /db_xref="GeneID:100041952"
                     /db_xref="MGI:MGI:3709048"
     CDS             1..282
                     /gene="Defa34"
                     /gene_synonym="Gm15315"
                     /note="novel defensin-related cryptidin"
                     /codon_start=1
                     /product="uncharacterized protein LOC100041952 precursor"
                     /protein_id="NP_001170999.1"
                     /db_xref="CCDS:CCDS52514.1"
                     /db_xref="GeneID:100041952"
                     /db_xref="MGI:MGI:3709048"
                     /translation="MKTIVLLSALVLLAFQVQADPIQKTDEETNTEEQPGEEDQAVSI
                     SFGGQEGSALHEELSKKLICYCRIRGCKRRERVFGTCRNLFLTFVFCCS"
     exon            1..172
                     /gene="Defa34"
                     /gene_synonym="Gm15315"
                     /inference="alignment:Splign:2.1.0"
     exon            173..376
                     /gene="Defa34"
                     /gene_synonym="Gm15315"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgaagacaa ttgtcctcct ctctgccctt gtcctgctgg ccttccaagt ccaggctgat
       61 cctatccaaa aaacagatga agagactaat actgaggagc agccagggga agaggaccag
      121 gctgtgtcta tctcctttgg aggccaagaa gggtctgctc ttcatgaaga attgtcaaaa
      181 aagctgatat gctattgtag aataagaggc tgcaaaagaa gagaacgcgt ttttgggacc
      241 tgcagaaatc tttttttaac tttcgtattc tgctgcagct gaatatgcag atgacaaaga
      301 tatgacaacc atcggctctg aggccactga tgctggggcc tgatgatcac ttctcaataa
      361 attgtttgca atatgc
//
