LOCUS       NM_001177521             427 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Mus musculus defensin, alpha, 32 (Defa32), mRNA.
ACCESSION   NM_001177521 XM_001477105 XM_001477117
VERSION     NM_001177521.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 427)
  AUTHORS   Amid,C., Rehaume,L.M., Brown,K.L., Gilbert,J.G., Dougan,G.,
            Hancock,R.E. and Harrow,J.L.
  TITLE     Manual annotation and analysis of the defensin gene cluster in the
            C57BL/6J mouse reference genome
  JOURNAL   BMC Genomics 10, 606 (2009)
   PUBMED   20003482
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC239604.3.
            
            On or before Apr 15, 2010 this sequence version replaced
            XM_001477105.1, XM_001477117.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AV064382.1, AV066436.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-217               AC239604.3         30448-30664         c
            218-427             AC239604.3         29682-29891         c
FEATURES             Location/Qualifiers
     source          1..427
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 10.35 cM"
     gene            1..427
                     /gene="Defa32"
                     /gene_synonym="Cryptdin-4; Defa20; Defcr20; Gm15308"
                     /note="defensin, alpha, 32"
                     /db_xref="GeneID:100041890"
                     /db_xref="MGI:MGI:3709042"
     exon            1..217
                     /gene="Defa32"
                     /gene_synonym="Cryptdin-4; Defa20; Defcr20; Gm15308"
                     /inference="alignment:Splign:2.1.0"
     CDS             46..333
                     /gene="Defa32"
                     /gene_synonym="Cryptdin-4; Defa20; Defcr20; Gm15308"
                     /note="novel defensin-related cryptidin; Alpha-defensin
                     20"
                     /codon_start=1
                     /product="uncharacterized protein LOC100041890 precursor"
                     /protein_id="NP_001170992.1"
                     /db_xref="CCDS:CCDS52509.1"
                     /db_xref="GeneID:100041890"
                     /db_xref="MGI:MGI:3709042"
                     /translation="MKTLVLLSALVLLAFQVQADPIQNTDEETNTEEQPGEEDQAVSV
                     SFGDPEGSALHEKSSRDLICYCRKGGCNRGEQVYGTCSGRLLFCCRRRHRH"
     exon            218..427
                     /gene="Defa32"
                     /gene_synonym="Cryptdin-4; Defa20; Defcr20; Gm15308"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acacattggg ctcctgctca ccaattctcc aggtgactca cagccatgaa gacacttgtc
       61 ctcctctctg ccctcgtcct gctggccttc caggtccagg ctgatcctat ccaaaacaca
      121 gatgaggaga ctaatactga ggagcagcca ggggaggagg accaggctgt gtctgtctcc
      181 tttggagacc cagaaggatc tgctcttcat gaaaaatcgt cgagagatct gatatgctat
      241 tgtagaaaag gaggctgcaa tagaggagaa caagtttatg ggacctgctc aggacgactt
      301 ttgttctgct gccgccgccg ccaccgccac tgaacatgca gatggcagag atatgacaac
      361 catcagctct gaggctactg atgctggggc ctgataacca cttctcaata aattgtttgc
      421 aatatgc
//
