LOCUS       NM_001024922            2104 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus DEAD box helicase 49 (Ddx49), transcript variant 1,
            mRNA.
ACCESSION   NM_001024922
VERSION     NM_001024922.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2104)
  AUTHORS   Piao,Y., Ko,N.T., Lim,M.K. and Ko,M.S.
  TITLE     Construction of long-transcript enriched cDNA libraries from
            submicrogram amounts of total RNAs by a universal PCR amplification
            method
  JOURNAL   Genome Res 11 (9), 1553-1558 (2001)
   PUBMED   11544199
REFERENCE   2  (bases 1 to 2104)
  AUTHORS   Clarke,D., Elgar,G. and Clark,M.S.
  TITLE     Comparative analysis of human 19p12-13 region in Fugu and mouse
  JOURNAL   Mamm Genome 12 (6), 478-483 (2001)
   PUBMED   11353399
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC085301.1 and AA544796.1.
            
            On Jun 18, 2005 this sequence version replaced NM_001024922.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC099554.1, SRR15390195.74177.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1042              BC085301.1         1-1042
            1043-2089           BC085301.1         1117-2163
            2090-2104           AA544796.1         347-361
FEATURES             Location/Qualifiers
     source          1..2104
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 34.15 cM"
     gene            1..2104
                     /gene="Ddx49"
                     /gene_synonym="R27090_2"
                     /note="DEAD box helicase 49"
                     /db_xref="GeneID:234374"
                     /db_xref="MGI:MGI:2136689"
     exon            1..130
                     /gene="Ddx49"
                     /gene_synonym="R27090_2"
                     /inference="alignment:Splign:2.1.0"
     CDS             16..1458
                     /gene="Ddx49"
                     /gene_synonym="R27090_2"
                     /EC_number="3.6.4.13"
                     /note="DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 49;
                     DEAD box protein 49; DEAD (Asp-Glu-Ala-Asp) box
                     polypeptide 49; DEAD
                     (aspartate-glutamate-alanine-aspartate) box polypeptide
                     27"
                     /codon_start=1
                     /product="probable ATP-dependent RNA helicase DDX49"
                     /protein_id="NP_001020093.2"
                     /db_xref="CCDS:CCDS22364.1"
                     /db_xref="GeneID:234374"
                     /db_xref="MGI:MGI:2136689"
                     /translation="MAGFAEIGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLG
                     CAKTGSGKTAAFVLPILQKLSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDC
                     IIVGGMDMVAQALELSRKPHVVIATPGRLADHLRSSNTFNMKKIQFLVMDEADRLLEQ
                     GCTDFTTDLETILAAVPARRQTLLFSATLTDTLKELQGLATNEPFFWEAQATVRTVEQ
                     LDQRYLLVPEKVKDAYLVHLVQTFQDQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTV
                     ALHSMMKQKERFAALAKFKSSIYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIH
                     RVGRTARAGRQGQAITLVTQYDIHLLHAIEEQIKQQLAELVVEEAEVLQILTQVNVVR
                     RECEIKLEASHFDEKKEINKRKQMILEGKDPDLEAKRKAELAKIKQQNRRFKEKVGQT
                     LRRQKAGSTVRRSRPPRSRPQEPAQAEAQD"
     exon            131..254
                     /gene="Ddx49"
                     /gene_synonym="R27090_2"
                     /inference="alignment:Splign:2.1.0"
     exon            255..340
                     /gene="Ddx49"
                     /gene_synonym="R27090_2"
                     /inference="alignment:Splign:2.1.0"
     exon            341..462
                     /gene="Ddx49"
                     /gene_synonym="R27090_2"
                     /inference="alignment:Splign:2.1.0"
     exon            463..650
                     /gene="Ddx49"
                     /gene_synonym="R27090_2"
                     /inference="alignment:Splign:2.1.0"
     exon            651..791
                     /gene="Ddx49"
                     /gene_synonym="R27090_2"
                     /inference="alignment:Splign:2.1.0"
     exon            792..867
                     /gene="Ddx49"
                     /gene_synonym="R27090_2"
                     /inference="alignment:Splign:2.1.0"
     exon            868..944
                     /gene="Ddx49"
                     /gene_synonym="R27090_2"
                     /inference="alignment:Splign:2.1.0"
     exon            945..1042
                     /gene="Ddx49"
                     /gene_synonym="R27090_2"
                     /inference="alignment:Splign:2.1.0"
     exon            1043..1117
                     /gene="Ddx49"
                     /gene_synonym="R27090_2"
                     /inference="alignment:Splign:2.1.0"
     exon            1118..1206
                     /gene="Ddx49"
                     /gene_synonym="R27090_2"
                     /inference="alignment:Splign:2.1.0"
     exon            1207..1278
                     /gene="Ddx49"
                     /gene_synonym="R27090_2"
                     /inference="alignment:Splign:2.1.0"
     exon            1279..2100
                     /gene="Ddx49"
                     /gene_synonym="R27090_2"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1492..1497
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ddx49"
                     /gene_synonym="R27090_2"
                     /note="hexamer: AGTAAA"
     polyA_site      1515
                     /gene="Ddx49"
                     /gene_synonym="R27090_2"
                     /note="major polyA site"
     regulatory      2081..2086
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ddx49"
                     /gene_synonym="R27090_2"
                     /note="hexamer: ATTAAA"
     polyA_site      2100
                     /gene="Ddx49"
                     /gene_synonym="R27090_2"
ORIGIN      
        1 gcccgggtct ggagcatggc ggggttcgct gagatcgggt tgtcgtcgtg gctggtagaa
       61 cagtgtcgac agctggggtt gaagcagccc acgccggtgc agctcgggtg cattccggcc
      121 atcctggaag gtcgggactg cttgggctgt gcaaaaacag gaagtggcaa gacagcagcc
      181 tttgtgcttc ccatcttgca gaagctgtct gaggaccctt atggcatctt ctgcttggtt
      241 ctgacaccca ccagagagct ggcctaccag atcgctgagc agttccgggt gctggggaag
      301 cctctgggtc tgaaggactg catcattgtt ggtggaatgg acatggtggc tcaggcgctg
      361 gagctctctc ggaagccaca tgtagtgatt gccacccctg ggcgcctggc tgaccacctg
      421 cgcagttcca acactttcaa catgaagaaa atccaattcc tggtgatgga tgaggccgac
      481 aggctgctgg agcagggttg caccgacttc accacagacc tggagaccat cctggcagcc
      541 gttccagcac gaaggcaaac gctgctgttc agtgccacgc tgactgacac actcaaggag
      601 ctgcagggcc tggccaccaa cgagcccttc ttttgggagg cacaggccac agtccgcaca
      661 gtggagcagc ttgatcagcg ctatttgttg gtaccggaga aggtgaagga cgcctacctg
      721 gttcacctag tccagacctt ccaggaccag ctggaggact gctccatcat catcttcacc
      781 aatacctgca agacctgcca gatcctttgt atgatgcttc gaaagttcaa cttccccaca
      841 gtggcactgc actccatgat gaagcagaaa gagcgctttg cggccctggc caaattcaag
      901 tccagcatct atcggattct tattgccact gacgtggcct caaggggcct ggacatcccc
      961 accgtgcagg tggtcatcaa ccacaacacc cctgggcttc ccaagatcta catccatcgg
     1021 gttggccgca cagcccgtgc agggaggcag gggcaagcca tcacactggt gacgcagtat
     1081 gatatccacc tgttgcatgc catcgaggag cagatcaagc agcagctggc agagctggtg
     1141 gtggaggagg ctgaggttct acaaatcctc acgcaggtca acgtagtgcg aagggagtgc
     1201 gaaataaaac tggaggcttc gcattttgat gaaaagaaag agatcaacaa gcggaaacag
     1261 atgatcctgg aggggaagga cccagacctg gaggccaaac gcaaagctga gctggccaag
     1321 atcaagcaac aaaaccgacg cttcaaggag aaagtggggc agacacttcg gcggcagaaa
     1381 gcagggagca ctgtccgacg gtcgcgtcct cccagatctc ggccccaaga gccagcccag
     1441 gctgaggctc aggactgagc tgtaaacctg gtgctggtgg cccctgactt cagtaaacac
     1501 tctttgaagt tgtcagtctg acttgagaat ggggtgggat gagtacaggg ccttcaggtc
     1561 tcaggatccc aaagcctctg ttgccccatg gggatgacta gtgcagcctt ccctcgcagt
     1621 gtccctgggg cgcagggcag cagcagccag ggacagcaac gccacacgta gaaatgtaac
     1681 ctgggtagaa gcactgccca aggattctag aaaactctac acagtgcaaa gctcagagac
     1741 agctggggtc ccctggcccc tgccagggcg ccttgaggcc gcagacactc catggcagac
     1801 tagggtgctg cctctgccag gcgtgccagg ccttcacgca gctcgctgag ctcaaacagc
     1861 cgaacatcca gcagctgcgc agcccggccc acctccgccc gtgcgcgctc ccgctcggcc
     1921 cgcgcctcct ccaggttgca ctccatcgac cgcagctgct gctccagctc tgcattccgg
     1981 gtctccaggt cctacacggg gaagacgggg tggggtggaa gctctggttg ccagttatgg
     2041 ctgatgtggc ccatggctct caccgggtca gtaaagtgcc attaaagtgt gaagtactga
     2101 aaaa
//
