LOCUS       NM_026360               1764 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus DEAD box helicase 47 (Ddx47), mRNA.
ACCESSION   NM_026360
VERSION     NM_026360.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1764)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1764)
  AUTHORS   Combes,A.N., Lesieur,E., Harley,V.R., Sinclair,A.H., Little,M.H.,
            Wilhelm,D. and Koopman,P.
  TITLE     Three-dimensional visualization of testis cord morphogenesis, a
            novel tubulogenic mechanism in development
  JOURNAL   Dev Dyn 238 (5), 1033-1041 (2009)
   PUBMED   19334288
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY123864.1, AK010310.1 and BB682132.1.
            
            On Jun 30, 2010 this sequence version replaced NM_026360.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC095944.1, AK010310.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-8                 BY123864.1         1-8
            9-1759              AK010310.1         2-1752
            1760-1764           BB682132.1         489-493
FEATURES             Location/Qualifiers
     source          1..1764
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="6"
                     /map="6 65.77 cM"
     gene            1..1764
                     /gene="Ddx47"
                     /gene_synonym="4930588A18Rik"
                     /note="DEAD box helicase 47"
                     /db_xref="GeneID:67755"
                     /db_xref="MGI:MGI:1915005"
     exon            1..117
                     /gene="Ddx47"
                     /gene_synonym="4930588A18Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             31..1398
                     /gene="Ddx47"
                     /gene_synonym="4930588A18Rik"
                     /EC_number="3.6.4.13"
                     /note="DEAD box protein 47; DEAD (Asp-Glu-Ala-Asp) box
                     polypeptide 47"
                     /codon_start=1
                     /product="probable ATP-dependent RNA helicase DDX47"
                     /protein_id="NP_080636.2"
                     /db_xref="CCDS:CCDS20643.1"
                     /db_xref="GeneID:67755"
                     /db_xref="MGI:MGI:1915005"
                     /translation="MAADEEPDSPSGALQTAAEEEETKTFKDLGVTDVLCEACDQLGW
                     AKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTR
                     ELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENT
                     KGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRA
                     ALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNT
                     QRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDV
                     VVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKLPVFPTQ
                     DEEVMMLTERVNEAQRFARMELREHGEKKKRKREDAGDDDDKEGAIGVRNKVAGGKMK
                     KRKGR"
     exon            118..211
                     /gene="Ddx47"
                     /gene_synonym="4930588A18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            212..400
                     /gene="Ddx47"
                     /gene_synonym="4930588A18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            401..472
                     /gene="Ddx47"
                     /gene_synonym="4930588A18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            473..591
                     /gene="Ddx47"
                     /gene_synonym="4930588A18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            592..663
                     /gene="Ddx47"
                     /gene_synonym="4930588A18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            664..780
                     /gene="Ddx47"
                     /gene_synonym="4930588A18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            781..927
                     /gene="Ddx47"
                     /gene_synonym="4930588A18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            928..1065
                     /gene="Ddx47"
                     /gene_synonym="4930588A18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1066..1136
                     /gene="Ddx47"
                     /gene_synonym="4930588A18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1137..1266
                     /gene="Ddx47"
                     /gene_synonym="4930588A18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1267..1764
                     /gene="Ddx47"
                     /gene_synonym="4930588A18Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1740..1745
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ddx47"
                     /gene_synonym="4930588A18Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      1760
                     /gene="Ddx47"
                     /gene_synonym="4930588A18Rik"
                     /note="major polyA site"
ORIGIN      
        1 tcggccccac ttccggagcc cacgagcaag atggcggcgg acgaggaacc cgattccccc
       61 tctggagccc ttcagacagc tgcggaagag gaggaaacga aaacatttaa agacctgggt
      121 gttacggatg tattgtgtga agcttgtgac cagttgggat gggcaaagcc caccaagatc
      181 cagatcgaag ctattccttt ggccttgcaa ggtcgtgata ttattgggtt ggcagaaacg
      241 ggatctggga aaacaggtgc ctttgctttg cccatcctga atgccctgct ggagacgccc
      301 cagcgactgt tcgccctggt cctcacccct actcgagagt tggcctttca gatctctgag
      361 cagttcgagg ccctggggtc atctattgga gtgcagtgtg ctgtcattgt tggtggaatt
      421 gattcaatgt ctcagtcact agcattggcc aaaaaaccac atatagtaat agctactcct
      481 ggccgactga ttgaccactt ggaaaatacc aaaggcttca acttaagagc tcttaagtac
      541 ttggtcatgg atgaagcaga ccggatactg aacatggatt ttgagacaga ggttgacaag
      601 atcctcaaag tgattccccg agatcggaaa acatttctct tttctgccac catgaccaag
      661 aaggtacaaa aacttcagcg tgcagctctt aagaaccctg tgaaatgtgc tgtgtcctct
      721 aagtaccaga ctgtggagaa actgcagcag tattaccttt ttattccctc gaaattcaag
      781 gatacctacc tggtttatat tctcaatgaa ctggctggaa actcctttat gatattctgc
      841 agcacctgta acaacactca gagaacagct ttgctgctcc gaaatctcgg gttcactgcc
      901 atccccctcc atggacagat gagtcagagc aagcgcctcg gatcccttaa taagtttaag
      961 gctaaggcga ggtccattct tctagcgact gatgtcgcca gcagaggtct ggacataccc
     1021 catgtggatg tagtggtcaa ttttgacatt ccgactcatt ctaaggatta tatccatcga
     1081 gttggacgaa ccgcgagagc tgggcgctct gggaaggcca ttacttttgt aacacagtat
     1141 gacgtggaac tcttccagcg catcgagcac ttgattggaa agaagctgcc tgtctttccg
     1201 acgcaggatg aggaggtcat gatgctcacg gaacgtgtga atgaggccca gaggtttgcc
     1261 cggatggagt taagggagca cggagaaaag aagaaacgga agcgagagga tgcaggagat
     1321 gatgatgata aggagggcgc cattggtgtg aggaacaagg tggctggggg caaaatgaag
     1381 aagcggaaag gccgctaatg ctttagaaag acttctgctc gcctgctcgc cagctgtgag
     1441 attctgtcca gagaccactc ggccagctgg gagaacgttc ctcgggattg cagtgtcatt
     1501 gcaatgggac aacttttaca gtgttgacac aggactggcc gctcttcagc ttgcattcct
     1561 cacctgtgac acaagtgccg tgtgctcttc atgctgcacc tctgccttcc cacctgcaag
     1621 ccacggcctg gcggatggag agcgctgact gtagttaact gtaaagcttc tacagaatgg
     1681 tgtgtacgcc accttatctc agccggcatt cagcctgatg tgggtcaata attattatga
     1741 ttaaagatgt atttttatta cctg
//
