LOCUS       NM_001033294            3328 bp    mRNA    linear   ROD 05-AUG-2024
DEFINITION  Mus musculus DEAD/H box helicase 31 (Ddx31), transcript variant 1,
            mRNA.
ACCESSION   NM_001033294 XM_355323
VERSION     NM_001033294.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3328)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 3328)
  AUTHORS   Krol,A.J., Roellig,D., Dequeant,M.L., Tassy,O., Glynn,E.,
            Hattem,G., Mushegian,A., Oates,A.C. and Pourquie,O.
  TITLE     Evolutionary plasticity of segmentation clock networks
  JOURNAL   Development 138 (13), 2783-2792 (2011)
   PUBMED   21652651
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL732526.8 and BC066017.1.
            
            On Jul 24, 2009 this sequence version replaced NM_001033294.2.
            
            Transcript Variant: This variant (1) represents the protein-coding
            transcript.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC132351.1, AK030888.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849380
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-363               AL732526.8         68670-69032
            364-2967            BC066017.1         1-2604
            2968-3328           AL732526.8         133479-133839
FEATURES             Location/Qualifiers
     source          1..3328
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 19.38 cM"
     gene            1..3328
                     /gene="Ddx31"
                     /gene_synonym="5830444G11Rik; Gm997"
                     /note="DEAD/H box helicase 31"
                     /db_xref="GeneID:227674"
                     /db_xref="MGI:MGI:2682639"
     exon            1..455
                     /gene="Ddx31"
                     /gene_synonym="5830444G11Rik; Gm997"
                     /inference="alignment:Splign:2.1.0"
     CDS             447..2510
                     /gene="Ddx31"
                     /gene_synonym="5830444G11Rik; Gm997"
                     /EC_number="3.6.4.13"
                     /note="DEAD box protein 31; probable ATP-dependent RNA
                     helicase DDX31; DEAD/H (Asp-Glu-Ala-Asp/His) box
                     polypeptide 31"
                     /codon_start=1
                     /product="ATP-dependent DNA helicase DDX31"
                     /protein_id="NP_001028466.2"
                     /db_xref="CCDS:CCDS15848.1"
                     /db_xref="GeneID:227674"
                     /db_xref="MGI:MGI:2682639"
                     /translation="MKRQAEATKRKHQVSSDAPPAKRRSEISSVLAKKASDKETQRTF
                     KGSTHKTFPPKKYLDSIGNGRQEEKPCIKTSSLFKNNPEIPELHSTVVKQAREQVFSP
                     EAFQELDLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCV
                     PVVQSLQALTSKIQRSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEK
                     RKSEKARLRKGINILISTPGRLVDHIKSTKNLHFNRIRWLIVDEADRILDLGFEKDIT
                     VILNAVNAECQKRQNVLLSATLTEGVTRLVDISLHNPVSISVLDKNCNQPNPKEVASI
                     QLNSFAIPESLDQHVVLVPSKLRLVCLAAFILQKCKFEKNQKMIVFFSSCELVEFHYS
                     LFLHTLLCHSGTPTSEHLPSASWPLKFLRLHGNMEQEERTSVFHEFSHSETGVLLCTD
                     VASRGLDLPQVTWIVQYSAPSSPAEYIHRIGRTARIGCHGSSLLILAPSEAEYVNSLA
                     SHKINVGEIKMEDILAVLAKDDCFKRRQRGAQKSRASGPQEIRERATVLQTVFEDYVH
                     SSQRMVSWAKKALQSFIRAYATYPKELKSIFHVRALHLGHVAKSFGLRDAPRNLSVSA
                     VKKASLKRPHPRRKTQRKQHLVPAEVLHSEHSSGLEGGATKCRKQGKQQGLQVAPSKP
                     GPWRE"
     exon            456..712
                     /gene="Ddx31"
                     /gene_synonym="5830444G11Rik; Gm997"
                     /inference="alignment:Splign:2.1.0"
     exon            713..788
                     /gene="Ddx31"
                     /gene_synonym="5830444G11Rik; Gm997"
                     /inference="alignment:Splign:2.1.0"
     exon            789..832
                     /gene="Ddx31"
                     /gene_synonym="5830444G11Rik; Gm997"
                     /inference="alignment:Splign:2.1.0"
     exon            833..903
                     /gene="Ddx31"
                     /gene_synonym="5830444G11Rik; Gm997"
                     /inference="alignment:Splign:2.1.0"
     exon            904..968
                     /gene="Ddx31"
                     /gene_synonym="5830444G11Rik; Gm997"
                     /inference="alignment:Splign:2.1.0"
     exon            969..1013
                     /gene="Ddx31"
                     /gene_synonym="5830444G11Rik; Gm997"
                     /inference="alignment:Splign:2.1.0"
     exon            1014..1055
                     /gene="Ddx31"
                     /gene_synonym="5830444G11Rik; Gm997"
                     /inference="alignment:Splign:2.1.0"
     exon            1056..1120
                     /gene="Ddx31"
                     /gene_synonym="5830444G11Rik; Gm997"
                     /inference="alignment:Splign:2.1.0"
     exon            1121..1240
                     /gene="Ddx31"
                     /gene_synonym="5830444G11Rik; Gm997"
                     /inference="alignment:Splign:2.1.0"
     exon            1241..1347
                     /gene="Ddx31"
                     /gene_synonym="5830444G11Rik; Gm997"
                     /inference="alignment:Splign:2.1.0"
     exon            1348..1556
                     /gene="Ddx31"
                     /gene_synonym="5830444G11Rik; Gm997"
                     /inference="alignment:Splign:2.1.0"
     exon            1557..1733
                     /gene="Ddx31"
                     /gene_synonym="5830444G11Rik; Gm997"
                     /inference="alignment:Splign:2.1.0"
     exon            1734..1793
                     /gene="Ddx31"
                     /gene_synonym="5830444G11Rik; Gm997"
                     /inference="alignment:Splign:2.1.0"
     exon            1794..1844
                     /gene="Ddx31"
                     /gene_synonym="5830444G11Rik; Gm997"
                     /inference="alignment:Splign:2.1.0"
     exon            1845..1984
                     /gene="Ddx31"
                     /gene_synonym="5830444G11Rik; Gm997"
                     /inference="alignment:Splign:2.1.0"
     exon            1985..2066
                     /gene="Ddx31"
                     /gene_synonym="5830444G11Rik; Gm997"
                     /inference="alignment:Splign:2.1.0"
     exon            2067..2178
                     /gene="Ddx31"
                     /gene_synonym="5830444G11Rik; Gm997"
                     /inference="alignment:Splign:2.1.0"
     exon            2179..2341
                     /gene="Ddx31"
                     /gene_synonym="5830444G11Rik; Gm997"
                     /inference="alignment:Splign:2.1.0"
     exon            2342..3328
                     /gene="Ddx31"
                     /gene_synonym="5830444G11Rik; Gm997"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2948..2953
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ddx31"
                     /gene_synonym="5830444G11Rik; Gm997"
                     /note="hexamer: GATAAA"
     polyA_site      2971
                     /gene="Ddx31"
                     /gene_synonym="5830444G11Rik; Gm997"
                     /note="major polyA site"
     regulatory      3301..3306
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ddx31"
                     /gene_synonym="5830444G11Rik; Gm997"
                     /note="hexamer: AATAAA"
     polyA_site      3324
                     /gene="Ddx31"
                     /gene_synonym="5830444G11Rik; Gm997"
                     /note="major polyA site"
ORIGIN      
        1 gtctggaaag tgcgctccgg tagggctgac ccgaggcgcg cctgcagaca cgcggagaag
       61 gtgggcgctt cagagagtcc ctttcctaga cactgggtgc taggtccgac taagagccca
      121 cgggagagtg agcctccgtg ggtgactgaa aagctgagaa gaccagcgtg gtggctaaag
      181 gagaccctgc tgggtgggcg gcgctcggcc tcttccggtt tcggaggcgt gtgaggcctc
      241 ttgtctcccg ccggtgcgtg ccgtcccggc tcccggaccc ggaaggggcg gcggcggacc
      301 ggcgatagtt gcgaagatcc tccctctcca cgtgctacct gggctccctg ctggttccgc
      361 ggctccgcac ttgggctttg gctactgtct gcagcacttt gcctgaccgg ccttccagga
      421 cgtgcttcgg acgcactcag gtccagatga agcggcaagc agaggctacc aagagaaagc
      481 accaagtgtc cagtgatgct ccaccagcaa aacggaggag tgaaatatcc tctgttttgg
      541 ccaagaaagc cagtgataaa gaaactcaga gaacatttaa agggagtaca cacaaaacgt
      601 ttcctccaaa gaagtatttg gacagtatag gcaatggaag gcaagaggag aagccatgca
      661 tcaagacttc atcgctgttt aaaaacaacc ctgagatccc agaactccac agcactgtag
      721 tgaagcaggc tcgagagcaa gtgttctctc cagaagcttt ccaggagctg gacctccacc
      781 cacatctaat ttctacaata aatacagtct taaaaatgtc cagtatgacc agtgttcaga
      841 agcagagtat cccagtgctg ctggaaggca gagatgccct agtgcggtcc cagacgggct
      901 caggtaaaac tcttgcctat tgcgtccctg tggtccagtc tcttcaagca ctgacatcaa
      961 aaatacagcg cagtgatgga ccgtatgctt tggtcctagt gcccaccaga gagttggctc
     1021 tgcaaagctt tgacactgtt cagaagctac ttaagccatt cacctggatt gttcctggag
     1081 tgttgatggg tggagagaag aggaaatcgg aaaaagctag actccgaaaa ggcataaata
     1141 tccttatctc cactcctggc cgtctagtgg atcatataaa atccacaaag aaccttcact
     1201 ttaaccgaat acggtggctg attgtggatg aagcagacag gatcttggat ttgggttttg
     1261 agaaggacat cacagtgatt ctgaatgctg tcaatgctga gtgtcagaaa cggcagaatg
     1321 tcctcctgtc agcgacactc acagaaggtg taacacggct agttgatatc agtttgcaca
     1381 atccagtcag tatctctgtc ctggacaaaa actgcaacca gcccaatcct aaggaagttg
     1441 ctagtatcca gctcaacagc tttgccatac cagagagtct cgaccagcat gtggtgttgg
     1501 ttcccagcaa gctacgtctt gtctgccttg cagccttcat cctgcaaaag tgcaagtttg
     1561 agaagaacca gaagatgatt gtctttttct caagttgtga attggtggag ttccactaca
     1621 gcctcttcct tcacaccctg ctttgccact cagggacccc tacttcagag catctgccat
     1681 ctgcctcctg gccactgaaa ttccttcggc tgcatggcaa catggaacag gaggaaagaa
     1741 catccgtgtt tcatgagttc tcccattctg aaacgggagt cttgctctgc acggatgttg
     1801 catctcgagg cttggatctc ccacaagtca cctggattgt tcagtacagt gctccgtctt
     1861 cacctgcaga gtacattcac cgcatcggaa gaactgcccg gattggctgt catgggagca
     1921 gcctgctcat tttggctcct tcggaggcag aatatgtcaa ctcgttggct tctcacaaaa
     1981 tcaatgttgg tgagattaag atggaagata ttttggctgt cctggcaaag gatgattgtt
     2041 ttaaaaggag acaaagggga gcccagaaat cccgtgccag tggcccccag gaaatccgag
     2101 aacgagccac agtattgcag acagtgtttg aagattatgt gcactccagt cagaggatgg
     2161 tctcctgggc taagaaagcc ctgcagtcct tcatccgagc ctatgccacc taccccaagg
     2221 agctgaagtc catcttccat gtccgagccc tacaccttgg gcacgtggct aagagttttg
     2281 gactaagaga tgctcctaga aacctcagtg tctctgctgt gaagaaggca agcttaaaaa
     2341 ggcctcaccc tcggaggaag acgcagagga agcagcacct tgtgcctgct gaagtcctgc
     2401 actcagaaca ctcaagtggg ctggagggtg gtgccacgaa gtgcagaaag caaggcaaac
     2461 aacagggcct tcaggtggca cccagcaagc cggggccgtg gagagaatga agctgcttct
     2521 tcatccagaa ggctcaccac cagccagcaa gcttcttttg gttgtttttt agttgctaca
     2581 ggaccgggtc agggtggatc caacatggcc tcgaggcttt agattgatgt cctgttctta
     2641 tcatgaaagc ttctgaaaaa taactggcac cgctccctga atacagactc tcaagagggc
     2701 agatcctcgc ctgttggagg aggagccccg aacgaaacaa agtaggcagg ggccggccgg
     2761 tgctagacag tcacccacct ttggccaagc ttcttgtgag attgctcatg gacagcaagc
     2821 attctgtgtg tcagcctgga tgagtggagc tcctggcaag cttgccagat taagcagcca
     2881 catgtgtatc gtatgagtgt tgtaggataa aagatgttaa aaactggaat tgaactttgt
     2941 acagagggat aaagtatttg ttgaatagtt attttcttag tccatatgtt ctgttagaaa
     3001 ggcccaaggg cttttacctt gggttaaaac ctggccatgt tggaagccac ttccttcttc
     3061 cttaagcaca gcatagcacc atgtgcgctg cctctccttc cctatccaca gactactcgc
     3121 cttctctggg ctaattgatt gacttgtgcc tttatattat ttgcctttga agtcaaaagg
     3181 ccttttgcct tttggctctt caggatctga ggtctttgtg tgtgacctag acccagaatc
     3241 cacacaccat tgtgtttccg agaggtttga aagaggaccc ctggagcgta tcgatttctc
     3301 aataaatgta agacttggac actacaga
//
