LOCUS       NM_028038               1871 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus DEAD box helicase 28 (Ddx28), mRNA.
ACCESSION   NM_028038
VERSION     NM_028038.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1871)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1871)
  AUTHORS   Diez-Roux,G., Banfi,S., Sultan,M., Geffers,L., Anand,S., Rozado,D.,
            Magen,A., Canidio,E., Pagani,M., Peluso,I., Lin-Marq,N., Koch,M.,
            Bilio,M., Cantiello,I., Verde,R., De Masi,C., Bianchi,S.A.,
            Cicchini,J., Perroud,E., Mehmeti,S., Dagand,E., Schrinner,S.,
            Nurnberger,A., Schmidt,K., Metz,K., Zwingmann,C., Brieske,N.,
            Springer,C., Hernandez,A.M., Herzog,S., Grabbe,F., Sieverding,C.,
            Fischer,B., Schrader,K., Brockmeyer,M., Dettmer,S., Helbig,C.,
            Alunni,V., Battaini,M.A., Mura,C., Henrichsen,C.N.,
            Garcia-Lopez,R., Echevarria,D., Puelles,E., Garcia-Calero,E.,
            Kruse,S., Uhr,M., Kauck,C., Feng,G., Milyaev,N., Ong,C.K.,
            Kumar,L., Lam,M., Semple,C.A., Gyenesei,A., Mundlos,S., Radelof,U.,
            Lehrach,H., Sarmientos,P., Reymond,A., Davidson,D.R., Dolle,P.,
            Antonarakis,S.E., Yaspo,M.L., Martinez,S., Baldock,R.A., Eichele,G.
            and Ballabio,A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1871)
  AUTHORS   Pagliarini,D.J., Calvo,S.E., Chang,B., Sheth,S.A., Vafai,S.B.,
            Ong,S.E., Walford,G.A., Sugiana,C., Boneh,A., Chen,W.K., Hill,D.E.,
            Vidal,M., Evans,J.G., Thorburn,D.R., Carr,S.A. and Mootha,V.K.
  TITLE     A mitochondrial protein compendium elucidates complex I disease
            biology
  JOURNAL   Cell 134 (1), 112-123 (2008)
   PUBMED   18614015
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC120582.1, AK163480.1 and AC133499.3.
            
            On Aug 4, 2009 this sequence version replaced NM_028038.2.
            
            ##Evidence-Data-START##
            Transcript is intronless :: BC120582.1, AK163480.1 [ECO:0000345]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: reported by MitoCarta
            RefSeq Select criteria             :: based on single
                                                  protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-48                BC120582.1         1-48
            49-1865             AK163480.1         2-1818
            1866-1871           AC133499.3         56216-56221
FEATURES             Location/Qualifiers
     source          1..1871
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 53.08 cM"
     gene            1..1871
                     /gene="Ddx28"
                     /gene_synonym="2410004K13Rik; Mddx28"
                     /note="DEAD box helicase 28"
                     /db_xref="GeneID:71986"
                     /db_xref="MGI:MGI:1919236"
     exon            1..1871
                     /gene="Ddx28"
                     /gene_synonym="2410004K13Rik; Mddx28"
                     /inference="alignment:Splign:2.1.0"
     CDS             63..1685
                     /gene="Ddx28"
                     /gene_synonym="2410004K13Rik; Mddx28"
                     /EC_number="3.6.4.13"
                     /note="DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 28;
                     DEAD (Asp-Glu-Ala-Asp) box polypeptide 28; mitochondrial
                     DEAD box protein 28; ATP-dependent RNA helicase Ddx28"
                     /codon_start=1
                     /product="probable ATP-dependent RNA helicase DDX28"
                     /protein_id="NP_082314.2"
                     /db_xref="CCDS:CCDS22626.1"
                     /db_xref="GeneID:71986"
                     /db_xref="MGI:MGI:1919236"
                     /translation="MALAGPSRLLALAVRLLLEPRRNLVVRGSDQSLPVVRVPRALQR
                     RQEQRQSGRGSLQRPVLVRPGPLLVSARRPELNQPARLTLGRWERAPLASRGWKHRRS
                     RQDHFSIERVQQEAPALRNLSSRGSFVDLGLEPRVLLALQEAVPEVVQPTSVQSKTIP
                     PLLRGRHLLCAAETGSGKTLSYLLPLFQRLLRGSDLDSRSFTAPRGLVLVPSRELAEQ
                     VQAVAQSLGGYLGLQVIELGGGLGMSRLKLQLYRRPAADVLVATPGALWKALKSQLIS
                     LQHLNFIVLDEVDTLLDESFLELVDYILEKSPIAESPAELEDPFNPKAQLVLVGATFP
                     EGLNQLLSKVTSPDSLTTITSSKLHCLMPHVRQTFMRLKGADKVTELVQILKQQDKAS
                     KTEPSGTVLVFCNSASTVNWLGYILDDHKIQHLRLQGQMPASMRAGIFQSFQKGSQNI
                     LVCTDIASRGLDSVHVEVVINYDFPPTLQDYIHRAGRVGRVGSEVPGSVISFVTHPWD
                     VSLVQKIELAARRRRSLPGLASSVGDPLPQKA"
     regulatory      1845..1850
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ddx28"
                     /gene_synonym="2410004K13Rik; Mddx28"
                     /note="hexamer: AATAAA"
     polyA_site      1866
                     /gene="Ddx28"
                     /gene_synonym="2410004K13Rik; Mddx28"
                     /note="major polyA site"
ORIGIN      
        1 ctccagacta cggtggcgtg cttgacgtca ttagcgcgcg cctcttctgc atcaagggaa
       61 atatggcttt agccgggcca tcgcggctgc tggcgttagc agtacggttg cttctggagc
      121 ctcgacggaa cctagtggtg cgcggttccg accagtcctt gccagtggtg cgcgttccgc
      181 gggctctgca gcgacggcag gaacagcgac agagcggccg tgggagtttg cagcggccag
      241 tgctagtgcg ccccggtccc ctgctggtct cggcgcggcg gccggagttg aaccagcccg
      301 cacgcctcac gctgggccgt tgggagcgag cgccactggc ttcccgtggc tggaagcatc
      361 ggcgatcgcg gcaagaccat ttctccatag agcgagtgca gcaagaggcg cccgccctga
      421 ggaacctctc gtcccggggc agcttcgtgg acctgggtct ggaaccccga gtgctgctgg
      481 cgcttcagga ggctgtcccc gaagttgtgc agccaacctc agtgcagtcg aaaaccatcc
      541 ccccactgct tcgaggccgc cacctccttt gcgctgcgga aactggcagt ggcaagacgc
      601 ttagctacct actgccccta tttcagcggc tcctgagagg gtcagacctg gactcccgca
      661 gtttcacggc tcctcgaggc ttggttctgg taccttcccg agaactagcc gaacaggtgc
      721 aggcagtggc ccagtcactg ggtgggtact tgggcctgca ggtgatagaa cttggcggag
      781 gcctcgggat gagtaggctc aaacttcagc tgtatagacg accggcagcc gatgtgttag
      841 tggctactcc aggggcgctg tggaaggctc tgaaaagtca actgatcagc ttacagcatc
      901 ttaacttcat agtgctagat gaagtagaca cactgctaga tgaaagcttc ctggaactgg
      961 tggactacat cttggaaaag agccctatag cagaaagtcc agccgagtta gaagacccct
     1021 ttaatcccaa agcccagtta gtgctggtgg gagccacgtt tccagaaggc ctaaaccagt
     1081 tactgagtaa agtcaccagt ccagacagtc tgaccaccat taccagctcc aagctgcact
     1141 gtctcatgcc tcatgtcaga cagacattta tgagactgaa gggagcagac aaggtgacag
     1201 aactggttca gatcctcaaa cagcaggaca aagcaagtaa gacggaaccc tcgggaactg
     1261 tcctggtatt ctgcaacagc gccagcaccg tgaactggct tgggtacatt ctggatgacc
     1321 acaagattca acatctaagg ctgcaagggc aaatgccggc ctcaatgagg gcaggtatct
     1381 tccagagttt ccagaagggc tcccagaaca tacttgtctg cacagacatc gcctcccgag
     1441 gcctagacag tgtccacgtg gaagtggtta tcaattacga tttcccccct accctgcagg
     1501 attacatcca cagagcagga agggtgggtc gtgtgggcag cgaagtgcca gggtccgtta
     1561 tcagttttgt gacccacccc tgggatgtga gcctggttca gaaaattgaa ctggcagctc
     1621 gccgaaggag aagccttcca ggactagcat cttcagtggg ggaccctttg cctcaaaagg
     1681 cctgattttt ggttggcttg aatctagtgc tagagcagga agttgaacac ttgtcagtgg
     1741 gcgacattga gtcacgccag cccttgcctc tctgaaagca tgatgaattg tttggagatt
     1801 tgaaaagtaa actactggac aggattggaa agtaacgttc agaaaataaa gtggattttg
     1861 actttacact a
//
