LOCUS       NM_001080981            2814 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus DEAD box helicase 23 (Ddx23), mRNA.
ACCESSION   NM_001080981 XM_619355
VERSION     NM_001080981.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2814)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2814)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AC156543.10.
            
            On Feb 3, 2007 this sequence version replaced XM_619355.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN01164135,
                              SAMN01164143 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-67                AC156543.10        62093-62159         c
            68-273              AC156543.10        57500-57705         c
            274-384             AC156543.10        55872-55982         c
            385-478             AC156543.10        52158-52251         c
            479-544             AC156543.10        51743-51808         c
            545-683             AC156543.10        51188-51326         c
            684-817             AC156543.10        50735-50868         c
            818-930             AC156543.10        50514-50626         c
            931-1074            AC156543.10        50183-50326         c
            1075-1300           AC156543.10        49863-50088         c
            1301-1446           AC156543.10        49414-49559         c
            1447-1624           AC156543.10        48985-49162         c
            1625-1867           AC156543.10        47757-47999         c
            1868-2019           AC156543.10        46744-46895         c
            2020-2128           AC156543.10        46433-46541         c
            2129-2303           AC156543.10        45614-45788         c
            2304-2814           AC156543.10        44777-45287         c
FEATURES             Location/Qualifiers
     source          1..2814
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 54.65 cM"
     gene            1..2814
                     /gene="Ddx23"
                     /gene_synonym="3110082M05Rik; 4921506D17Rik"
                     /note="DEAD box helicase 23"
                     /db_xref="GeneID:74351"
                     /db_xref="MGI:MGI:1921601"
     exon            1..67
                     /gene="Ddx23"
                     /gene_synonym="3110082M05Rik; 4921506D17Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             68..2527
                     /gene="Ddx23"
                     /gene_synonym="3110082M05Rik; 4921506D17Rik"
                     /EC_number="3.6.1.-"
                     /note="DEAD (Asp-Glu-Ala-Asp) box polypeptide 23"
                     /codon_start=1
                     /product="probable ATP-dependent RNA helicase DDX23"
                     /protein_id="NP_001074450.1"
                     /db_xref="CCDS:CCDS37193.1"
                     /db_xref="GeneID:74351"
                     /db_xref="MGI:MGI:1921601"
                     /translation="MAGELADKKDRDASPKEERKRSRTPERDRDRDRDRKSSPSKDRK
                     RHRSRDRRRGGSRSRSRSRSKSVERERRHKERERDKERDRSKKERERDKDGHRRDKDR
                     KRSSLSPGRGKDFKSRKDRDSKKGDEDEHGDKRPKIQPLSLEELLAKKKAEEEAEAKP
                     KFLSKAEREAEALKRRQQEVEERQKMLEEERKKRKQFQDLGRKMLEDPQERERRERRE
                     RMERETNGNEDEEGRQKIREEKDKSKELHAIKERYLGGIKKRRRTRHLNDRKFVFEWD
                     ASEDTSIDYNPLYKERHQVQLLGRGFIAGIDLKQQKREQSRFYGDLMEKRRTLEEKEQ
                     EEARLRKLRKKEAKQRWDDRHWSQKKLDEMTDRDWRIFREDYSITTKGGKIPNPIRSW
                     KDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLV
                     WITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISRE
                     DQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKIL
                     EHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPA
                     VVYIGSAGKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKS
                     LEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDM
                     AKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAILESPVSSCPPELANHP
                     DAQHKPGTILTKKRREETIFA"
     exon            68..273
                     /gene="Ddx23"
                     /gene_synonym="3110082M05Rik; 4921506D17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            274..384
                     /gene="Ddx23"
                     /gene_synonym="3110082M05Rik; 4921506D17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            385..478
                     /gene="Ddx23"
                     /gene_synonym="3110082M05Rik; 4921506D17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            479..544
                     /gene="Ddx23"
                     /gene_synonym="3110082M05Rik; 4921506D17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            545..683
                     /gene="Ddx23"
                     /gene_synonym="3110082M05Rik; 4921506D17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            684..817
                     /gene="Ddx23"
                     /gene_synonym="3110082M05Rik; 4921506D17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            818..930
                     /gene="Ddx23"
                     /gene_synonym="3110082M05Rik; 4921506D17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            931..1074
                     /gene="Ddx23"
                     /gene_synonym="3110082M05Rik; 4921506D17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1075..1300
                     /gene="Ddx23"
                     /gene_synonym="3110082M05Rik; 4921506D17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1301..1446
                     /gene="Ddx23"
                     /gene_synonym="3110082M05Rik; 4921506D17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1447..1624
                     /gene="Ddx23"
                     /gene_synonym="3110082M05Rik; 4921506D17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1625..1867
                     /gene="Ddx23"
                     /gene_synonym="3110082M05Rik; 4921506D17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1868..2019
                     /gene="Ddx23"
                     /gene_synonym="3110082M05Rik; 4921506D17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2020..2128
                     /gene="Ddx23"
                     /gene_synonym="3110082M05Rik; 4921506D17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2129..2303
                     /gene="Ddx23"
                     /gene_synonym="3110082M05Rik; 4921506D17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2304..2814
                     /gene="Ddx23"
                     /gene_synonym="3110082M05Rik; 4921506D17Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggaaacgcga aagatggcga ctgttcggcg acgttgaggc cgcgttaggc ggttcaggcg
       61 cggggtgatg gcaggagaac tggctgacaa aaaggaccga gacgcatcac ccaaggagga
      121 aaggaagcga tcacggactc ctgagagaga tcgcgataga gaccgggacc ggaagtcctc
      181 cccatctaaa gataggaagc ggcatcgctc acgggatagg cgtagaggag ggagccgttc
      241 tcgctctcgg tcccgttcca agtctgtaga gagggaacgg cggcacaaag agcgggagcg
      301 agataaggaa cgggaccgga gtaagaagga gcgggagcgg gacaaggatg gccaccgacg
      361 ggacaaggac cgaaaaagat ccagcttgtc tcctggccga ggaaaggatt tcaagtctcg
      421 gaaggacaga gattctaaga agggtgacga ggatgaacat ggagacaagc gacctaagat
      481 ccagccactg tccctggagg aacttctggc caagaaaaag gctgaggagg aagctgaagc
      541 taagcccaaa ttcctctcta aagcagagcg ggaggctgaa gctctgaagc ggcggcagca
      601 ggaggtggag gagcgccaga agatgctcga agaggagcgg aagaaaagga aacagttcca
      661 ggacctgggc aggaagatgc tggaagatcc tcaggaaagg gaacggagag aacggaggga
      721 aaggatggag cgggagacca acggaaatga ggatgaggag gggcggcaga agatccggga
      781 agaaaaggac aagagcaagg agctgcacgc cattaaggag cgttacctgg gtggcatcaa
      841 aaaacggcgc cgaacaaggc atctcaatga ccgaaagttt gtgtttgagt gggatgcgtc
      901 tgaagacacc tccattgatt acaaccccct gtataaagaa cgacaccagg tgcagctgtt
      961 ggggcgaggc ttcattgcag gcattgacct aaagcagcag aagcgagagc agtcacgttt
     1021 ctatggagac ctgatggaga agaggcgaac cctggaggaa aaggagcagg aggaagcaag
     1081 actccgcaaa cttcgcaaaa aggaggccaa gcaacgctgg gatgaccgcc attggtccca
     1141 gaagaagttg gatgagatga cggacaggga ctggcggatc ttccgtgaag attacagcat
     1201 caccaccaaa ggtggcaaga tccccaatcc catccggtcc tggaaagatt cgtctctgcc
     1261 ccctcatatc ctggaagtca ttgataagtg tggctacaag gagccaacac ctatccagcg
     1321 tcaggccatt cccattgggc tgcagaatcg tgacatcatt ggtgtagctg agactggcag
     1381 tggcaagaca gcagccttcc tcatcccatt gctagtctgg atcaccacac ttcccaagat
     1441 tgacaggatc gaagagtcag accagggccc ttatgccatc atcctggctc ctacccgtga
     1501 gttggctcag cagattgagg aagaaaccat caagttcgga aagccactcg gtatccgcac
     1561 tgtggctgtc atcggtggca tctccagaga agaccaaggc ttccggctac gcatgggctg
     1621 tgagattgtg atcgccaccc cggggcgcct gatcgatgtg ctggagaacc ggtacctggt
     1681 gctgagccgc tgcacctacg tggttctgga tgaggcggat aggatgattg acatgggctt
     1741 tgagccagat gtgcagaaga tcctggaaca catgcctgtc agcaaccaga agccggacac
     1801 agatgaggct gaggacccgg agaagatgtt ggccaacttt gaatcaggaa aacataaata
     1861 ccgtcaaaca gtcatgttca cggctactat gcccccagcg gtggagcgtc tagccaggag
     1921 ctatcttcgg cgacctgctg tggtgtacat tggctctgca ggcaagcccc atgagcgggt
     1981 ggaacagaag gtcttcctca tgtcggaatc agaaaagagg aagaagctgc tggccatctt
     2041 ggaacaaggt tttgatccgc ctatcatcat ttttgtcaac cagaagaagg gttgtgatgt
     2101 gttggccaag tctctggaga agatggggta taacgcctgt acactgcatg gcggcaaagg
     2161 ccaggagcag cgagaatttg cattgtccaa cctcaaggct ggagccaagg atattttggt
     2221 ggctacagat gtggctggcc gtggtattga tatccaagat gtgtctatgg ttgtcaacta
     2281 tgatatggcc aaaaatattg aagattacat tcacagaatt ggccgcacag gaagagcggg
     2341 caagagtggc gtagccatca ccttcctcac caaggaggac tcagcggtgt tctatgaact
     2401 gaagcaggcc atcctggaga gcccagtgtc gtcctgccct ccagagctgg caaaccaccc
     2461 agatgcccag cacaaacctg gcaccatcct caccaagaag cgcagggaag agaccatctt
     2521 tgcttgacac agcgcctgac tggagtagaa gccatctctg gagctggtgc ctgctctcag
     2581 gcccttgtgt cccttcccag gctctttctt ggacatgggc ttaggaagta gtcaggtccc
     2641 gggtctggaa gcctgtgagg ggctccatgg gcacgggaag gtggtgtagg aggcagaggg
     2701 gcgcagttac atcaggctcg gcccagctct gcccctgcag ccttgccgtc ctcgtcctgg
     2761 ctgtggggcg gctgcctagc accaccctgt ccccagcctg aacaaacacc tggt
//
