LOCUS       NM_001417999            1920 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus dephospho-CoA kinase domain containing (Dcakd),
            transcript variant 2, mRNA.
ACCESSION   NM_001417999 XM_006534038
VERSION     NM_001417999.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1920)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1920)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
REFERENCE   3  (bases 1 to 1920)
  AUTHORS   Shalom-Barak,T., Zhang,X., Chu,T., Timothy Schaiff,W., Reddy,J.K.,
            Xu,J., Sadovsky,Y. and Barak,Y.
  TITLE     Placental PPARgamma regulates spatiotemporally diverse genes and a
            unique metabolic network
  JOURNAL   Dev Biol 372 (1), 143-155 (2012)
   PUBMED   22967998
REFERENCE   4  (bases 1 to 1920)
  AUTHORS   Taniwaki,T., Haruna,K., Nakamura,H., Sekimoto,T., Oike,Y.,
            Imaizumi,T., Saito,F., Muta,M., Soejima,Y., Utoh,A., Nakagata,N.,
            Araki,M., Yamamura,K. and Araki,K.
  TITLE     Characterization of an exchangeable gene trap using pU-17 carrying
            a stop codon-beta geo cassette
  JOURNAL   Dev Growth Differ 47 (3), 163-172 (2005)
   PUBMED   15840001
REFERENCE   5  (bases 1 to 1920)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   6  (bases 1 to 1920)
  AUTHORS   Araki,K., Imaizumi,T., Sekimoto,T., Yoshinobu,K., Yoshimuta,J.,
            Akizuki,M., Miura,K., Araki,M. and Yamamura,K.
  TITLE     Exchangeable gene trap using the Cre/mutated lox system
  JOURNAL   Cell Mol Biol (Noisy-le-grand) 45 (5), 737-750 (1999)
   PUBMED   10512203
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL731805.8 and AL731670.13.
            
            On Mar 14, 2023 this sequence version replaced XM_006534038.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR17784643.219336.1,
                                           SRR7652917.1059643.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131 [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-133               AL731805.8         2667-2799           c
            134-295             AL731670.13        198189-198350       c
            296-502             AL731670.13        171079-171285       c
            503-706             AL731670.13        170573-170776       c
            707-794             AL731670.13        168282-168369       c
            795-1920            AL731670.13        164976-166101       c
FEATURES             Location/Qualifiers
     source          1..1920
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 66.71 cM"
     gene            1..1920
                     /gene="Dcakd"
                     /gene_synonym="3010024O21Rik; 6720485C15Rik"
                     /note="dephospho-CoA kinase domain containing"
                     /db_xref="GeneID:68087"
                     /db_xref="MGI:MGI:1915337"
     exon            1..133
                     /gene="Dcakd"
                     /gene_synonym="3010024O21Rik; 6720485C15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            134..295
                     /gene="Dcakd"
                     /gene_synonym="3010024O21Rik; 6720485C15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            296..502
                     /gene="Dcakd"
                     /gene_synonym="3010024O21Rik; 6720485C15Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             391..1086
                     /gene="Dcakd"
                     /gene_synonym="3010024O21Rik; 6720485C15Rik"
                     /codon_start=1
                     /product="dephospho-CoA kinase domain-containing protein"
                     /protein_id="NP_001404928.1"
                     /db_xref="GeneID:68087"
                     /db_xref="MGI:MGI:1915337"
                     /translation="MFLVGLTGGIASGKSSVIQVFQQLGCAVIDVDVIARHVVQPGYP
                     AHRRIVEAFGTEVLLENGDIDRKVLGDLIFNQPDRRQLLNSITHPEIRKEMMKETFKY
                     FLRGYRYVILDIPLLFETKKLLKYMKHTVVVYCDRDTQLARLMKRNNLNREDAEARIN
                     AQLPLKDKARMANHVLDNSGEWSLTRRQAILLHAKLERSMEYLPLRLGFLTGLAGIAS
                     LLYLLTRYLLPSP"
     exon            503..706
                     /gene="Dcakd"
                     /gene_synonym="3010024O21Rik; 6720485C15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            707..794
                     /gene="Dcakd"
                     /gene_synonym="3010024O21Rik; 6720485C15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            795..1920
                     /gene="Dcakd"
                     /gene_synonym="3010024O21Rik; 6720485C15Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1895..1900
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Dcakd"
                     /gene_synonym="3010024O21Rik; 6720485C15Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1920
                     /gene="Dcakd"
                     /gene_synonym="3010024O21Rik; 6720485C15Rik"
                     /note="major polyA site"
ORIGIN      
        1 gcagttccat gttgaattag agtttcgcaa gtaaagggct tgcaaagtcc aaggttttca
       61 ggccgccctt ggtaatcaac aggccacaga tgagccgtta tcggctaacg ttaaggaccg
      121 ttaccattcc tggatgaaaa gactgttcca gaaaagttgg tacattgttt gtaggcggca
      181 aaatctgtct ataaatctgt atctacctac tctgtgccct ctgtaaggct tcaccgtcac
      241 accagtcaca ctgttggatc caggcaactt ccaaggacga atcagttata gccaggattt
      301 cccagcctgg tggagcagcc gactggcgag tgtgccaact gtcccgtgct tcccagctcc
      361 taccttgcct gtcttctctc tcctgggaag atgttcctgg tggggctgac gggaggcatc
      421 gcctcaggca agagctccgt catccaggta ttccaacagc tgggctgtgc tgtaatcgac
      481 gtggacgtca ttgcgcggca cgttgtccag ccagggtatc ctgcccaccg gcgtatagta
      541 gaggcctttg gcactgaagt cttgctggag aatggcgaca tcgaccgcaa ggtcctcgga
      601 gacctgatct tcaaccagcc tgaccgtcgg cagctgctca actccattac ccaccctgag
      661 atccgcaagg aaatgatgaa ggagaccttc aagtactttc tccgaggcta ccgatacgtg
      721 attctggaca tccccctcct gtttgagacc aagaagctgc tcaagtatat gaagcacaca
      781 gtggtagtgt actgtgaccg tgatacacag ctggcgcggc tgatgaagcg gaacaacctg
      841 aaccgggagg atgcagaggc gaggatcaac gcccagctgc ccctgaagga caaggcccgc
      901 atggccaatc acgttctgga caactcgggc gagtggagcc tcaccagacg ccaggccatc
      961 ctcctgcacg ccaagctgga acgctccatg gagtatctgc cgctgcggct tgggttcctg
     1021 acgggcctcg caggcatcgc cagtctcctc tacctgctca cccgttacct cctcccttcc
     1081 ccctagctgg gtacacccag gcagcaagcc ttaggcttcc ttctccttgg aggcctgagt
     1141 taggtaccat gtccacaaca ctacaactct cttgactctg agactggccc ctgcggtggg
     1201 gcggctttgg agtgtaacca gtctgggact cagcaaaaga agcccactac cccccgcgcc
     1261 ccacacacac acaccgacac cccaccccac ccgagcccta ccattcctaa ctaccactgc
     1321 agaacaacat ccatggtggc aggaaaccag cggttagcag gctctgcggc tctccctatg
     1381 gttacgactg tgtagccaaa agtgtcttgg gcttgaacct ttccagagca tctgccgcat
     1441 catggccaca agctgtctag tggaccacag caaatccttc cagactgaag gcctccttca
     1501 aatagagctc tcctgtgtgc agtgtggttc tcctcctggg cgtgccgtgg ctgggtcgag
     1561 cagagccctt tggagcagtc cagcttctga tggagctttc ctcacagcta gccaccaccc
     1621 cgtgctctcg gcattcccca ggccccaagc tctcctacct ctgtgccttc cccacatgct
     1681 ccctgccctg cagtatctta cccctggctg ccccaggtca ggctccagca gccccagact
     1741 gagttaggtg ctatagagat caccttcctg tctcatccaa atccacgaga gaataacgcg
     1801 taacctggtt gggttctccc agactgtacg cctctagatg gcagggccga ttcatctcca
     1861 ctctagtgta ccacagcctg ccccacaggt gctcaataaa tggaattgct ctaaaatgtc
//
