LOCUS       XM_036153936            3342 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus DDB1 and CUL4 associated factor 6 (Dcaf6),
            transcript variant X10, mRNA.
ACCESSION   XM_036153936
VERSION     XM_036153936.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000067.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3342
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="1"
     gene            1..3342
                     /gene="Dcaf6"
                     /gene_synonym="1200006M05Rik; Iqwd1; PC326"
                     /note="DDB1 and CUL4 associated factor 6; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 mRNAs, 8 ESTs, 202 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:74106"
                     /db_xref="MGI:MGI:1921356"
     CDS             445..2910
                     /gene="Dcaf6"
                     /gene_synonym="1200006M05Rik; Iqwd1; PC326"
                     /codon_start=1
                     /product="DDB1- and CUL4-associated factor 6 isoform X6"
                     /protein_id="XP_036009829.1"
                     /db_xref="GeneID:74106"
                     /db_xref="MGI:MGI:1921356"
                     /translation="MTVPNDPYTFLSCGEDGTVRWFDTRIKTSCTKEDCKDDILINCR
                     RAATSVAICPPVPYYLAVGCSDSSVRIYDRRMLGTRATGNYAGRGTTGMVARFIPSHL
                     SNKSCRVTSLCYSEDGQEILVSYSSDYIYLFDPKDDTARELKTPSAEERREELRQPPV
                     KRLRLRGDWSDTGPRARPESERERDGEQSPNVSLMQRMSDMLSRWFEEASEVAQSNRG
                     RGRPRPRGGTNQPDVSTLPTVPSSPNLEVCETAMDVDMPAALLQPSTSSTDPVQAQAA
                     TAAIESPRSSSLLSCPDSEPRQSVEASGHHAHHQSEFLRGPEIALLRKRLQQLRLKKA
                     EQQRQQELAQAQHQPPTSTSDPPPHEGSSRDPRASDSPSSVVNKQLGSMSLDEQQDNS
                     NERLSPKPGTGEPVLSLHYSTEGTTTSTIKLNFTDEWSSTASSSRGNGSHCKSEGQEE
                     CLVPPSSVQPPEGDSETRAPEELSEKGTLPENLTQNQIDTAQLDNFPAEPLDSNSGEK
                     NNPSQDSPCGLPEEGTLSETDRETCEQASTESATRHASTKPELPSQTEAIEQASTESA
                     TRHTSANPELPSQTEAIAPLAHEDPSARDSALQDTDDSDDDPVLIPGARYRTGPGDRF
                     NIRGTTVGDRIMRRSAVARIQEFFRRRKERKEMEELDTLNIRRPLVKMVYKGHRNSRT
                     MIKEANFWGANFVMSGSDCGHIFIWDRHTAEHLMLLEADNHVVNCLQPHPFDPILASS
                     GIDYDIKIWSPLEESRIFNRKLADEVITRNELMLEETRNTITVPASFMLRMLASLNHI
                     RADRLEGDRSEGSGQENENEDEE"
ORIGIN      
        1 cagcggcttc cgtcatgcct ctccaatcca ttaaggagta ggctagagcg ccctcaagct
       61 cctctcctag ggaagaagag aatttatcca aagattaaaa cttgaagcaa ctttaaatgt
      121 gcatgatggc tgtgttaata caatctgttg gaatgacact ggagaatata ttttatctgg
      181 ctctgatgac actaaacttg taattagtaa tccatacagc agaaaggttt tgacaaccat
      241 ccgttcaggg catcgagcaa atatatttag tgcaaagttt ttgccgtgca cagatgataa
      301 gcagattgtg tcttgctctg gagatggagt catattttat actaacattg agcaagatgc
      361 agaaactaac agacagtgcc aatttacgtg ccattatgga actacttatg agtgtttctt
      421 gtacttttgt ttcatcttca gattatgact gtaccaaacg acccttacac ctttctgtcc
      481 tgtggtgaag atggaactgt taggtggttt gacacacgca tcaaaaccag ttgcacaaaa
      541 gaagactgta aagatgatat tttaatcaac tgtaggcgtg ctgccacatc tgtggctatt
      601 tgtcccccag taccatatta ccttgctgtg ggttgttctg acagctcagt acggatttat
      661 gatcggcgaa tgctgggcac aagagctaca gggaattatg caggccgagg aactactgga
      721 atggttgctc gatttatacc ttctcatctt agtaacaaat catgcagagt gacatcactg
      781 tgttacagtg aagatggtca agagattctt gtcagttatt cttcagacta catctatctt
      841 tttgacccca aagatgatac tgcacgagaa cttaaaactc cttctgcaga ggagaggcga
      901 gaagagttac gacagcctcc agttaagcgc ttgagacttc gtggtgattg gtcagatact
      961 ggtcccagag cacggccaga aagtgaacga gaacgagatg gagagcaaag tcccaatgtg
     1021 tcactgatgc agagaatgtc tgatatgtta tcaaggtggt ttgaagaagc aagtgaagtt
     1081 gcacaaagca acagaggaag aggaagacct cggcccagag gtggaacaaa tcagccagat
     1141 gtttcaactc ttcctacggt tccatcaagt cctaatttgg aagtgtgtga aactgcaatg
     1201 gatgtagaca tgccagctgc acttcttcag ccttctacat cctctacaga tccagttcag
     1261 gctcaggcag ccacagccgc catagaaagc cctcgttcca gctcgttgct gtcttgccca
     1321 gacagtgaac cgaggcagtc tgttgaggcg tctggacacc atgcacatca tcagtcagaa
     1381 tttttaaggg ggcctgagat agctttgctc cgtaagcgcc tgcagcagct gaggcttaag
     1441 aaggctgagc agcagaggca gcaagagcta gcacaggccc agcatcagcc tcccacttcc
     1501 acttctgatc ctcctcctca cgagggctct tcacgggacc ctcgagcttc agattctcct
     1561 tcttctgtgg ttaacaaaca gctgggatcc atgtcacttg atgagcaaca ggataacagt
     1621 aatgagaggc tgagccccaa accagggaca ggtgaacccg ttttaagttt gcactacagc
     1681 acagaaggaa caactacaag cacaataaaa ctgaacttta cagatgaatg gagcagtaca
     1741 gcctcaagtt ccagaggaaa tgggagccat tgcaaatctg agggtcagga agaatgcttg
     1801 gtccctccga gctctgtgca gccaccggaa ggagacagtg aaacaagagc tcctgaagaa
     1861 ctatcagaga aaggaacact tccagaaaac ctcactcaaa accagataga tacagcacaa
     1921 cttgataact tcccagctga gccattggat tctaactcag gagagaagaa taacccaagt
     1981 caggacagcc cttgtgggct tccagaagaa ggcactttgt ctgaaacaga cagggagact
     2041 tgtgagcagg ccagcactga gagtgctacc aggcatgcta gcaccaagcc tgaactccca
     2101 tcccagacag aagccattga gcaggccagc actgagagtg ctaccaggca taccagtgcc
     2161 aatcctgaac tcccatccca gacagaagcc atagcacctt tagctcatga agacccatct
     2221 gccagggact ctgctctcca ggacacagat gacagcgatg atgatccggt cttgatccct
     2281 ggtgcaagat accgaacagg acctggtgat agatttaata tcagaggaac tacagtaggt
     2341 gatagaataa tgagacgctc cgctgttgcc cgcattcagg agttcttcag gaggagaaaa
     2401 gaaaggaaag aaatggaaga gctggatact ttgaacatta ggaggccact agtaaagatg
     2461 gtttataagg gccaccgcaa ctcccggaca atgataaaag aagccaattt ctggggtgct
     2521 aactttgtaa tgagcggttc cgattgtggc catatcttca tctgggaccg gcacactgct
     2581 gagcatttga tgcttctgga agctgataat catgtggtca actgcctgca gccccatccg
     2641 tttgacccaa ttctagcctc atctggcata gattatgaca taaagatctg gtcgccacta
     2701 gaagagtcaa gaatttttaa tcgaaaactt gctgatgaag ttataactcg gaatgaactc
     2761 atgctggaag agactcggaa caccatcacc gtcccagcct ctttcatgtt gaggatgttg
     2821 gcgtcactga atcatatccg agctgaccgt ctggagggtg acagatcaga aggttcaggt
     2881 caggagaatg aaaatgagga tgaagaataa agaactcctt ggcaagcact tagatgttct
     2941 gagatttgta tacgacattt attatatttt ttttctttac agaactttag tgcaatttaa
     3001 ggctatgggt tttttttttt tttttttttt tttggagttc ttccctattt tggggataac
     3061 caaacattgg tttggaatga gtgtgtgcat gagttgggag agtgtgtaaa acaaagtaag
     3121 caaaatgttt tttgaaacct tttgccgtgt atggagtcca aaaaaaaaaa aaaaaaaaaa
     3181 aaaaaagcaa agtgcaatac ttcctgaccc tccgctgtgg gagcttggat caatgctgaa
     3241 gtcattttca ttgtagtgaa aatgttggtt caaataaatt tctacacttg ccatttgcat
     3301 gtttgttgct ttctaattaa agatgttggt tgctttaaga ta
//
