LOCUS       XM_030246954            2376 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus DDB1 and CUL4 associated factor 4 (Dcaf4),
            transcript variant X5, mRNA.
ACCESSION   XM_030246954
VERSION     XM_030246954.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000078.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_030246954.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2376
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="12"
     gene            1..2376
                     /gene="Dcaf4"
                     /gene_synonym="1110018E21Rik; Wdr21"
                     /note="DDB1 and CUL4 associated factor 4; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 7 mRNAs, 10 ESTs, 486 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 27 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:73828"
                     /db_xref="MGI:MGI:1921078"
     CDS             909..2009
                     /gene="Dcaf4"
                     /gene_synonym="1110018E21Rik; Wdr21"
                     /codon_start=1
                     /product="DDB1- and CUL4-associated factor 4 isoform X4"
                     /protein_id="XP_030102814.1"
                     /db_xref="GeneID:73828"
                     /db_xref="MGI:MGI:1921078"
                     /translation="MERKKVEIQSSDPSALASDRFNFIMADTTSDRLFTVNDVKIGGS
                     KYGIINLQGLKAPTFEVQMHENLYFTNRKVNSVCWASLNHLDSHILLCLMGLAETPGC
                     ATLLPASLFVSNHQAGTDQPGMLCSFRIPGAWSCAWSLNVQANNCFSTGLSRRVLLTN
                     VVTGHRQSYRINSDVLAQQFAVKTPLLFNGCRSGEIFAIDLRSPSQAKGWKATQIFHD
                     SAVTSVQVFKEEQHLMASDMSGKIKLWDLRATKCVRQYEGHVNEYAYLPLHMHEEEGI
                     LVAVGQDCYTRIWSLHDARLLRTIPSPCPTSKANIPSVAFSPRLGGSRGAPGLLMAVQ
                     QDLYCFAYSSSCPDSQEEGRWELPSVSNEDIL"
ORIGIN      
        1 tgccaagccc gggcacgctc gaccaggaca aggcggaaat cctaagtccc gccctccgta
       61 aagaccgccc ctactgacat ggacaggcag aagcctaatt caatgagaag aaagaaccgg
      121 ccgctttagt cctatggggt gcgacaacac aacatgaggg tctttccgga tctttgcacg
      181 cccctgggtg ctccagccca gaagtgtcgt agctgagagg accatctgtg caggaacgga
      241 catggatagg aacatctgga agagtaggag aagacgcggg cgaagccgac accagagccc
      301 tgccctgggg cagtgtgatt ccagtgagag gtacgccaca ggggcatctc agagctcaca
      361 agattctggc caccatgatg ctgagtcccc gtcaacctcg tccagcagaa ctggagagtc
      421 ttcagtgcca gaacttccag gtttttactt tgaccctgaa aagaaccgat acttccgttt
      481 gctcccgggt cacaacaact gcaaccccct cacaaaggag ggcatccagc aaaaggagat
      541 ggagagcagg aggctgcagc tgctgcagca agaggacatg cagaaaaagg tctctcataa
      601 cccaagctgg tctggaaagc actgtgtcca aggatggctt tgaactggtg tccagtatcc
      661 acctctccag tgctagaatt ccaggtttat gcccacatgg ctgccttcac tgaatcaatc
      721 aatctttctt tctttctttc tttctttctt tctttctttc tttcttcctt tctttctttt
      781 ttaatttata aacttagaaa attaccagag tgggatttaa tgcatcttcc atcctacgaa
      841 aaaaccagct gggttttctc aacttctcca gttattgccg tttatcccat gagctgcggg
      901 tgagctgcat ggagaggaaa aaggtagaga ttcagagctc agacccttct gctctggcaa
      961 gtgaccggtt taacttcatc atggcagaca ctaccagtga ccgcctcttc acagtgaatg
     1021 acgtcaaaat cggaggctcc aagtacggca tcatcaacct gcagggtctc aaggccccca
     1081 cgttcgaggt gcagatgcat gaaaacctgt actttaccaa caggaaggtg aactctgtgt
     1141 gctgggcctc actcaatcac ttggactccc acatactgct gtgcctcatg ggccttgcag
     1201 agacgccagg ctgtgccacc ttgctccccg cttcactgtt tgtcagtaac caccaagcag
     1261 gtacagacca gcctggcatg ctctgtagtt tccggatccc tggggcctgg tcctgtgcct
     1321 ggtccttgaa cgtccaggca aataactgct tcagtacagg tttgtctcgg agggtcctct
     1381 tgaccaatgt ggtgacagga caccggcagt catacaggat caacagtgat gtcttggccc
     1441 agcagtttgc agtcaagact cctttgctgt ttaatggctg tcgttctggg gagatctttg
     1501 ccattgacct gcgttctcca agtcaagcca agggctggaa ggctacccaa attttccatg
     1561 actcagccgt gacctctgtg caggtcttca aggaggagca acacctgatg gcgtcagaca
     1621 tgtctggaaa gatcaagctg tgggacctga gggccactaa atgtgtgaga cagtatgaag
     1681 gtcatgtgaa tgagtacgcc tacctgccac tgcatatgca cgaggaggaa gggatcctgg
     1741 tggcagtggg ccaagactgc tacacacgga tctggagcct ccacgatgcc cgcctgctca
     1801 gaaccatacc ctccccatgc ccaacctcca aggccaacat tcccagtgtg gccttctctc
     1861 ctcggcttgg gggctcccgg ggcgccccag ggctgctcat ggccgtccag caggacctgt
     1921 actgtttcgc ctacagctcg tcttgtccag acagtcagga ggagggcagg tgggagctcc
     1981 cttctgtttc caatgaggac attttataaa tggtgcttgc tgtatgcaag tggagtcctt
     2041 cagcctcgga gggcagaatg caaagcgact gacctggggc ctggagagat ggctcagtgg
     2101 ttaagcactg gctgctcttc cagaggaccc aggttcaatt cccatcgacc aataggcacc
     2161 tcacaaccat ctcagactcc agttccagag aatccagccc cctcttctgg cctccttgac
     2221 ggcaggcatg cgtgggatat ggatagaaca cgcaggcaaa acacccgtac acataaaata
     2281 aaaaatacat tttcttcaat tttctaattt tgccaaagta tattatgtgg agtaatgtca
     2341 ataaaggctc agagtatgaa aggcctcatc ataaaa
//
