LOCUS       NM_026893               3454 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus DDB1 and CUL4 associated factor 12 (Dcaf12), mRNA.
ACCESSION   NM_026893
VERSION     NM_026893.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3454)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 3454)
  AUTHORS   Lidak,T., Baloghova,N., Korinek,V., Sedlacek,R., Balounova,J.,
            Kasparek,P. and Cermak,L.
  TITLE     CRL4-DCAF12 Ubiquitin Ligase Controls MOV10 RNA Helicase during
            Spermatogenesis and T Cell Activation
  JOURNAL   Int J Mol Sci 22 (10), 5394 (2021)
   PUBMED   34065512
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 3454)
  AUTHORS   Zhang,Y.L., Zhao,L.W., Zhang,J., Le,R., Ji,S.Y., Chen,C., Gao,Y.,
            Li,D., Gao,S. and Fan,H.Y.
  TITLE     DCAF13 promotes pluripotency by negatively regulating SUV39H1
            stability during early embryonic development
  JOURNAL   EMBO J 37 (18) (2018)
   PUBMED   30111536
REFERENCE   4  (bases 1 to 3454)
  AUTHORS   Okazaki,N., F-Kikuno,R., Ohara,R., Inamoto,S., Koseki,H.,
            Hiraoka,S., Saga,Y., Seino,S., Nishimura,M., Kaisho,T., Hoshino,K.,
            Kitamura,H., Nagase,T., Ohara,O. and Koga,H.
  TITLE     Prediction of the coding sequences of mouse homologues of KIAA
            gene: IV. The complete nucleotide sequences of 500 mouse
            KIAA-homologous cDNAs identified by screening of terminal sequences
            of cDNA clones randomly sampled from size-fractionated libraries
  JOURNAL   DNA Res 11 (3), 205-218 (2004)
   PUBMED   15368895
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY338453.1, AK031089.1, AK173289.1 and AA207929.1.
            
            On Aug 15, 2009 this sequence version replaced NM_026893.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR1660817.115576.1,
                                           SRR1660817.178719.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164134, SAMN01164142
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-71                BY338453.1         2-72
            72-2253             AK031089.1         2-2183
            2254-3451           AK173289.1         2114-3311
            3452-3454           AA207929.1         195-197
FEATURES             Location/Qualifiers
     source          1..3454
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 21.32 cM"
     gene            1..3454
                     /gene="Dcaf12"
                     /gene_synonym="1500001L20Rik; 5830424K06Rik; Wdr40a"
                     /note="DDB1 and CUL4 associated factor 12"
                     /db_xref="GeneID:68970"
                     /db_xref="MGI:MGI:1916220"
     exon            1..414
                     /gene="Dcaf12"
                     /gene_synonym="1500001L20Rik; 5830424K06Rik; Wdr40a"
                     /inference="alignment:Splign:2.1.0"
     exon            415..669
                     /gene="Dcaf12"
                     /gene_synonym="1500001L20Rik; 5830424K06Rik; Wdr40a"
                     /inference="alignment:Splign:2.1.0"
     exon            670..876
                     /gene="Dcaf12"
                     /gene_synonym="1500001L20Rik; 5830424K06Rik; Wdr40a"
                     /inference="alignment:Splign:2.1.0"
     exon            877..937
                     /gene="Dcaf12"
                     /gene_synonym="1500001L20Rik; 5830424K06Rik; Wdr40a"
                     /inference="alignment:Splign:2.1.0"
     exon            938..1131
                     /gene="Dcaf12"
                     /gene_synonym="1500001L20Rik; 5830424K06Rik; Wdr40a"
                     /inference="alignment:Splign:2.1.0"
     exon            1132..1197
                     /gene="Dcaf12"
                     /gene_synonym="1500001L20Rik; 5830424K06Rik; Wdr40a"
                     /inference="alignment:Splign:2.1.0"
     exon            1198..1360
                     /gene="Dcaf12"
                     /gene_synonym="1500001L20Rik; 5830424K06Rik; Wdr40a"
                     /inference="alignment:Splign:2.1.0"
     exon            1361..1539
                     /gene="Dcaf12"
                     /gene_synonym="1500001L20Rik; 5830424K06Rik; Wdr40a"
                     /inference="alignment:Splign:2.1.0"
     exon            1540..3454
                     /gene="Dcaf12"
                     /gene_synonym="1500001L20Rik; 5830424K06Rik; Wdr40a"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      1743
                     /gene="Dcaf12"
                     /gene_synonym="1500001L20Rik; 5830424K06Rik; Wdr40a"
                     /note="major polyA site"
     regulatory      2237..2242
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Dcaf12"
                     /gene_synonym="1500001L20Rik; 5830424K06Rik; Wdr40a"
                     /note="hexamer: ATTAAA"
     polyA_site      2258
                     /gene="Dcaf12"
                     /gene_synonym="1500001L20Rik; 5830424K06Rik; Wdr40a"
                     /note="major polyA site"
     regulatory      3432..3437
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Dcaf12"
                     /gene_synonym="1500001L20Rik; 5830424K06Rik; Wdr40a"
                     /note="hexamer: AATAAA"
     polyA_site      3452
                     /gene="Dcaf12"
                     /gene_synonym="1500001L20Rik; 5830424K06Rik; Wdr40a"
                     /note="major polyA site"
ORIGIN      
        1 atgtgcggct gcgcaggagt gacggggcgc gggcgagtgg gaggggggtg ttttggttct
       61 cgccgctcgc cgtcctttcc agacacggcg gtaggaaagc tgcttgttcc tgcttttcct
      121 tccccttccc ttccccttcc cctttcccaa cccggatttt cccttcttcc atttacgcgc
      181 ctcattttga tcgactgctg cccgggatcc gagccatttt ccgggccggg cgctcgaaag
      241 cgcgcggccc cagggcccgg ttcatgaccc gtcgccctgc cgccccttgc cttctccgcc
      301 tcatgtggct gcggggccac ggcggcgctg cccactatgg cccggaaagc agttagcagg
      361 aagcggaaag cgtctgcctc gccaggagcc gggagcgacg ctcagggccc gcagtttggc
      421 tgggatcatt cgctgcacaa aaggaaaaga ctccccccag tgaagagatc cctagtgtac
      481 tacctgaaga accgcgaagt caggctccag aatgagacca gctactctcg cctgttacat
      541 ggttatgcag cacaacagct tcccagtctc ctcaaggaga gagaatttca cctcgggacc
      601 cttaataaag tgtttgcttc tcagtggttg aatcataggc aagtggtgtg tggcacgaaa
      661 tgcaacacac tctttgtcgt ggatgtccag acaggccaga tcaccaagat tcccattctg
      721 aaagaccggg aacctggagg tgtgactcag cagggctgtg gtatccatgc aattgaactg
      781 aatccttcta gaacactcct agccactgga ggagacaacc ctaacagtct tgccatctac
      841 cgcctgccta ccttagatcc tgtgtgtgtg ggtgatgatg gacacaagga ttggatcttt
      901 tctattgcgt ggatcaacga tactatggca gtgtctggct cacgggatgg gtctatggga
      961 ctctgggagg tgacagatga tgtgttgacc aaaagtgatg caagacataa cgtgtcacca
     1021 gtccctgtgt atgctcacat cactcacaag gccttaaagg atatccccaa ggaggataca
     1081 aacccggaca actgcaaggt gcgggcttta gccttcaaca acaagaacaa ggagttggga
     1141 gcggtatcac tagatggcta ctttcatctc tggaaggctg aaaatacctt gtctaagctc
     1201 ctttccacca aattgccata ttgtcgagaa aacgtgtgtc tggcctatgg tagtgagtgg
     1261 tcagtgtatg cagtgggctc tcaagcgcat gtctccttct tggatccacg gcagccatcg
     1321 tacaacgtca agtctgtctg ctccagggaa cgaggcagtg ggattcgatc agtgagcttc
     1381 tatgaacaca ttatcactgt gggcacaggg cagggctccc tgctgttcta tgacatccga
     1441 gctcaaagat ttttggaaga gaggctctca gcttgttatg ggtccaagcc cagactcgca
     1501 ggggagaatc tgaaactaac tactggcagg ggctggctga atcatgatga aacctggagg
     1561 aattactttt cggacattga cttcttcccc aatgctgttt acacccactg ctacgactcg
     1621 tccggaacga aactctttgt ggcagggggc cccctccctt ctgggctcca cggaaactat
     1681 gctggactgt ggagttaatg acaactaact ttctcccaaa atgcagattt acactaactt
     1741 ccaccctcag tttccttgtt tgatttccct agctgtggaa ggctctcctg tctatgcaaa
     1801 cagagtttgc ttgtgggtca ggcagttact aggaagaggc tctatgcaga aatccaaaag
     1861 ctgggacgtt ctacgtcagt tggtggcttg ttgttctggg ttttttgttt gttttcactt
     1921 tgcagtaatt agaattttac ttttcccttt tctgcttttt aaagcaaaca ctgttacaat
     1981 ccctttttat tttttcctct ccttcctctg gcttctttac actgaaatga caaagtcatt
     2041 cttaccctta cttcactgag gtagggcccc tttataatcg tgtggtggct gtccgacttt
     2101 ctgtgaaagt gtgggagcct ttgtgtgcgt gtgtgtgtgt gtgtctgtct gtgtgtctgt
     2161 gtgcgtttgt gtgtgtgaac ttgtgtgcct gctggtactg catcactgat actacttgga
     2221 atgaggatta tctgtaatta aagtatttat aaaagaaaca actttactca gagtccagct
     2281 ttgggactag cctgtatctt ctttaaggtc cgacattgta ggaagagaaa cagacacacc
     2341 aggaaaaccc ttgagttaga gaagccggat gggaggggag gctgcatccc aggactccaa
     2401 actgtccagg cctacctgtc cttccaccca cgcaggaatg cccatgtgtg tgttacttcc
     2461 actcccgacc tcctgtctgc tcgcccagac tggggactgc aggccacatc acagcctaga
     2521 taaagacaat cctctcccca gcctcctgcc tctgacaggg tctgatctga ccgagagcag
     2581 gcagtctcga gcttgtgtgc ttactgctca tgacttggag gaggaacttt tccattcttg
     2641 gggttttgct ggtattttct aatttgtctg tccaggaagg tgtggtttgt agcgagtgct
     2701 ttgtgtgtgg gatctgttct cagtgcagca gggcttagtg ttggaagtca ctgtcctgct
     2761 ctgttggctc attcctaggg tagtgacagg tggctgtgcc agcatcgctg catgtgacag
     2821 tgtagctgtg attggtaatt tgcttgtttc tctcaaacta tttagtgtga agagtttttt
     2881 gttgttgttt ttgtttttaa cttgcaagcc agttgttgtc ttccgaacat catgtggaaa
     2941 ggaagctctc cccaccctag taccctgaga cacacagtgc tgcctgagaa atgcagtcat
     3001 acacctgcac ccagtttctc agttgctccc cagttcttcc atgctctctt tgtgtcaaat
     3061 gagtattctc ataatggctg gggctgctgg ggagggaagc ggcaggccca ccgtaggaca
     3121 cagcatcctc cacaggtttt agaataatca tcctataatc tagagaaata ggtgctatca
     3181 acaggaaatt aagcaaaatg ctggatgctg tgaatctttt gtcttaattt ttttctattc
     3241 ttaaactaca ggctgtagat gtcttagttc tcacagaact tctgtctttt taaactgact
     3301 tgtgtgttta agtaaacaaa actcttgtag gatgttttgt gccattgcca gtccgtctcc
     3361 tgtgatgctt ttgattgtct tgagattttc tgtttttaaa aatgtagcat ttgacttttt
     3421 tgccaaggaa aaataaatac tatcccagtg caga
//
