LOCUS       NM_028146               1620 bp    mRNA    linear   ROD 05-OCT-2024
DEFINITION  Mus musculus dysbindin domain containing 1 (Dbndd1), transcript
            variant 1, mRNA.
ACCESSION   NM_028146
VERSION     NM_028146.5
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1620)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1620)
  AUTHORS   Nunome,M., Ishimori,C., Aplin,K.P., Tsuchiya,K., Yonekawa,H.,
            Moriwaki,K. and Suzuki,H.
  TITLE     Detection of recombinant haplotypes in wild mice (Mus musculus)
            provides new insights into the origin of Japanese mice
  JOURNAL   Mol Ecol 19 (12), 2474-2489 (2010)
   PUBMED   20465587
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC158362.5.
            
            On Jul 22, 2021 this sequence version replaced NM_028146.4.
            
            Transcript Variant: This variant (1) represents the longest
            transcript and encodes the longest isoform (1). An in-frame AUG is
            located 29 codons upstream of the annotated translation start site
            but is not being annotated as a start site since it is not
            conserved and is too close to the presumed transcription start
            site.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK013173.1, AK028187.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849381, SAMN00849384
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            CDS uses downstream in-frame AUG :: lack of evidence for use of
                                                upstream AUG
            RefSeq Select criteria           :: based on conservation,
                                                expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-174               AC158362.5         15801-15974
            175-327             AC158362.5         21213-21365
            328-468             AC158362.5         21984-22124
            469-1620            AC158362.5         24369-25520
FEATURES             Location/Qualifiers
     source          1..1620
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 72.1 cM"
     gene            1..1620
                     /gene="Dbndd1"
                     /gene_synonym="2810427I04Rik; D8Ertd590e"
                     /note="dysbindin domain containing 1"
                     /db_xref="GeneID:72185"
                     /db_xref="MGI:MGI:1919435"
     exon            1..174
                     /gene="Dbndd1"
                     /gene_synonym="2810427I04Rik; D8Ertd590e"
                     /inference="alignment:Splign:2.1.0"
     exon            175..327
                     /gene="Dbndd1"
                     /gene_synonym="2810427I04Rik; D8Ertd590e"
                     /inference="alignment:Splign:2.1.0"
     exon            328..468
                     /gene="Dbndd1"
                     /gene_synonym="2810427I04Rik; D8Ertd590e"
                     /inference="alignment:Splign:2.1.0"
     exon            469..1620
                     /gene="Dbndd1"
                     /gene_synonym="2810427I04Rik; D8Ertd590e"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1592..1597
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Dbndd1"
                     /gene_synonym="2810427I04Rik; D8Ertd590e"
                     /note="hexamer: AATAAA"
     polyA_site      1598
                     /gene="Dbndd1"
                     /gene_synonym="2810427I04Rik; D8Ertd590e"
                     /note="major polyA site"
     polyA_site      1620
                     /gene="Dbndd1"
                     /gene_synonym="2810427I04Rik; D8Ertd590e"
                     /note="major polyA site"
ORIGIN      
        1 gggctcctcc ccgccaccgc ggccccttag ctgctgcccc gatgcgctgt gcccgaagcc
       61 cggactcagt agtcaccaga gcagttgggg cacccgggct gtcgccgccg ctgcccacac
      121 cccccgcgga ccccattggc cgcatggagt ctcccgaggg cgctggtccg ggagagatcg
      181 ttaaggacgt caaggtacca caggctgccc tgaatgtttc agctcatgag acaggggaca
      241 tgtgccgtac acctgtggca gaggaggagg aggaggttgg catcccaata ccagcaccag
      301 ggttcctgca ggtcacagag aggaggcagc ctctgagcag cgtctcctct ctggaggtcc
      361 acttcgatct cctggacctc actgagctga cggacatgtc tgaccaggag ttggccgagg
      421 tctttgcgga ctccgatgac gaaaaccttg ccactgagtc accagcaggt ctgcacccac
      481 tatctcgagc cagctgccta cgttcaccat cctggacgaa aacaagggcg gagcagaacc
      541 gtgagaaaca gccccccagt gacccagagc ggcaagggac aattgtggac acattcctca
      601 ctgtggagga gcccaaggaa gattagccag tctcctcctg ctccggagtt gctgaagggc
      661 tggcggacta ccgtaatggc accataggac agcactggca cagaggccct ctgccaactc
      721 caagactcca gccatcgccc ctgacaatgt gtcaaagtcc gggtgccagg cttaggccct
      781 tgggtgctct agcacaagca cagcccagtg gccttcggtc cagctggttc ctggtccctg
      841 aatcagggac gacactgatg gagtctctgc cttgggatga gagaaggaac agacagcagt
      901 ggtctgggtc ttgtcaaaac ttgtctctag gacaagactt tctgtctctt gtgattccaa
      961 acaggttcaa agggatccaa gcccatgagc tgcccaggaa cacatagggg tttatttatc
     1021 gccaacatca gtgagctcaa aagcccaaag tacatttggt ggcaggtcaa gggctggctc
     1081 tgctgtcaag ccaagtggca gtggtaggtg ttacttccct aagatttcca ccttgactga
     1141 aaattttaca cccttcctct gccctgggca ggcaccactg tttgtagtct ctgccccagg
     1201 gccgcttggc ttgtcctatg ggtgtgacag ttcaaaggct gaaaagctac cccaggtctt
     1261 ctttagttca gaacatccaa cctcagtgaa gacttccagg tggctcggaa ggacagagtg
     1321 ccacctcccc agtcctgtgt ctgtcagagg cgcacactgt gtatcctcca caccccattg
     1381 cctgaccgcc cacacatcct gcccaatgtt cggttgggag gctccgacac tgtggatctg
     1441 tctcgggagc agctgagggg tgacgggaac aacctagcca cccactgtgc tgtgagatgc
     1501 taggcactcg gtttagagat tcaacgttcc tttcatgtgc acaaagacaa acacactggc
     1561 tgctctgacc acaaatcaaa gactgttttg aaataaaagt gtacttgctt tttgtcccca
//
