LOCUS       NM_033075               3326 bp    mRNA    linear   ROD 31-OCT-2023
DEFINITION  Mus musculus DNA segment, Chr 17, human D6S56E 5 (D17H6S56E-5),
            mRNA.
ACCESSION   NM_033075 XR_876771 XR_882523 XR_883545
VERSION     NM_033075.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3326)
  AUTHORS   Bedogni F and Hevner RF.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3326)
  AUTHORS   Rutledge EA and McMahon AP.
  TITLE     Mutational analysis of genes with ureteric progenitor cell-specific
            expression in branching morphogenesis of the mouse kidney
  JOURNAL   Dev Dyn 249 (6), 765-774 (2020)
   PUBMED   32017326
REFERENCE   3  (bases 1 to 3326)
  AUTHORS   Rutledge EA, Benazet JD and McMahon AP.
  TITLE     Cellular heterogeneity in the ureteric progenitor niche and
            distinct profiles of branching morphogenesis in organ development
  JOURNAL   Development 144 (17), 3177-3188 (2017)
   PUBMED   28705898
REFERENCE   4  (bases 1 to 3326)
  AUTHORS   Wiese CB, Ireland S, Fleming NL, Yu J, Valerius MT, Georgas K, Chiu
            HS, Brennan J, Armstrong J, Little MH, McMahon AP and
            Southard-Smith EM.
  TITLE     A genome-wide screen to identify transcription factors expressed in
            pelvic Ganglia of the lower urinary tract
  JOURNAL   Front Neurosci 6, 130 (2012)
   PUBMED   22988430
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 3326)
  AUTHORS   van Kooij M, de Groot K, van Vugt H, Aten J and Snoek M.
  TITLE     Genotype versus phenotype: conflicting results in mapping a lung
            tumor susceptibility locus to the G7c recombination interval in the
            mouse MHC class III region
  JOURNAL   Immunogenetics 53 (8), 656-661 (2001)
   PUBMED   11797099
REFERENCE   6  (bases 1 to 3326)
  AUTHORS   Snoek M and van Vugt H.
  TITLE     The sequence and organization of the mouse valyl-tRNA synthetase
            gene G7a/Bat6 located in the MHC class III region
  JOURNAL   Immunogenetics 49 (5), 468-470 (1999)
   PUBMED   10199925
REFERENCE   7  (bases 1 to 3326)
  AUTHORS   Snoek M, Teuscher C and van Vugt H.
  TITLE     Molecular analysis of the major MHC recombinational hot spot
            located within the G7c gene of the murine class III region that is
            involved in disease susceptibility
  JOURNAL   J Immunol 160 (1), 266-272 (1998)
   PUBMED   9551980
REFERENCE   8  (bases 1 to 3326)
  AUTHORS   Bedian V, Adams T, Geiger EA, Bailey LC and Gasser DL.
  TITLE     A gene belonging to the Sm family of snRNP core proteins maps
            within the mouse MHC
  JOURNAL   Immunogenetics 46 (5), 427-430 (1997)
   PUBMED   9271633
REFERENCE   9  (bases 1 to 3326)
  AUTHORS   Snoek M, van Dinten L and van Vugt H.
  TITLE     A novel gene, G7e, resembling a viral envelope gene, is located at
            the recombinational hot spot in the class III region of the mouse
            MHC
  JOURNAL   Genomics 38 (1), 5-12 (1996)
   PUBMED   8954773
REFERENCE   10 (bases 1 to 3326)
  AUTHORS   Snoek M, Olavesen MG, van Vugt H, Milner CM, Teuscher C and
            Campbell RD.
  TITLE     Coding sequences and levels of expression of Hsc70t are identical
            in mice with different Orch-1 alleles
  JOURNAL   Immunogenetics 40 (2), 159-162 (1994)
   PUBMED   8026864
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC087117.9 and AK075966.1.
            
            On or before Feb 24, 2015 this sequence version replaced
            XR_882523.1, XR_876771.1, XR_883545.1, NM_033075.2.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: L78788.1, AK037701.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-369               AC087117.9         108995-109363       c
            370-2409            AK075966.1         2-2041
            2410-3326           AC087117.9         105341-106257       c
FEATURES             Location/Qualifiers
     source          1..3326
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 18.54 cM"
     gene            1..3326
                     /gene="D17H6S56E-5"
                     /gene_synonym="G7e"
                     /note="DNA segment, Chr 17, human D6S56E 5"
                     /db_xref="GeneID:110956"
                     /db_xref="MGI:MGI:1306799"
     exon            1..580
                     /gene="D17H6S56E-5"
                     /gene_synonym="G7e"
                     /inference="alignment:Splign:2.1.0"
     CDS             574..2364
                     /gene="D17H6S56E-5"
                     /gene_synonym="G7e"
                     /codon_start=1
                     /product="MLV-related proviral Env polyprotein-like"
                     /protein_id="NP_149066.2"
                     /db_xref="GeneID:110956"
                     /db_xref="MGI:MGI:1306799"
                     /translation="MKGDEVSITRREMLPSAPDGIKTPMTTIRFPKAKTLQILTLLIS
                     IGVVQTSPMPHEPHNLTWVITNTATGTVINSTSHLAPIGTWFPDLVFDLCALADGTWD
                     PLGLVWGCQHPAQHSELRRTPFYVCPGEGRSPQQTATCGGPESYFCAYWGCESTGSIS
                     WTPPIKDDLIKVQRSPGSESQGWGYGLQPKLDANDLGGPCSSNCNPITVQFTPKGKES
                     VGWEKGKTWGLRLYVSGYDYGVMFTIQLSARQGMPLGPNPALPPVGLTVTQSQITVPI
                     SQELRPRSGPWDLLKATYLVLNNSKPELTSKCWLCLDAQPPYYEGIAVPGNYTTSTDN
                     KDCRWQYPGKGRLTLELIQGKGLCFGTIPHTHRHLCNSIQEAPDRDAYIIPPINTWWA
                     CTTGLTSCIHTQALNLTNGFCVLVQLAPRILRYSDEMGTRLSPFPAARAKRATVAEIL
                     GASAFDFQDENYKVLSSAIDADLMELGKSLSKSKTSLTSLREATLRNQREQDFQSLQQ
                     DGLCKPLEKRCCTFVDNLKHARELLAKVRKRLEDRKREMEQGQPVWITVIATLSGFLG
                     LVILIVICKLYVVNPLMDSSRTRSPPSDTY"
     exon            581..3326
                     /gene="D17H6S56E-5"
                     /gene_synonym="G7e"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 caagtgaaag accccaccat aaggcttagc aagttagctg cagtaacgcc attttgcaag
       61 gcatgataaa gtaccagagc tgagttctca aaagttacaa ggaagtttag ttaaagaata
      121 aggctgaata ataccgggac aggggccaaa caggatatct gtggtcaagc acctgggccc
      181 cggctcaggg ccaagaacag atggtactca gataaagcga aaccagcaac agtttctgga
      241 aagtcccacc tcagtttcag gttccccaaa tgaccgggaa ataccccaag ccttatttaa
      301 actaaccaat cagctcgctt ctcgcttctg tacccgcgct ttttgccccc cagccctagc
      361 cctataagaa gggtaagtac tccacactcg gcgcgccagt catccgatag actgagtcgc
      421 ccgggtaccc gtgttcccaa taaagccttt tgctgttgca tccgaatcgt ggcctcgctg
      481 atccttggga gggtctcctc agagtgattg actacccagc ttgggggtct ttcacaagca
      541 gtgcctggct gctgggagct gttgctgtag ggaatgaaag gtgatgaagt ctcgatcact
      601 agacgggaga tgctgccaag tgccccagac gggatcaaga ctccaatgac aaccataaga
      661 ttccctaaag ctaagacact gcagatcttg actctgctga tttctatagg tgtggtccaa
      721 actagtccta tgccccatga accccataac cttacttggg ttataactaa cactgctacg
      781 gggactgtaa ttaactcgac ctcccacctc gcccccattg gaacttggtt tcctgatctt
      841 gtttttgatt tgtgtgcact agcggatggg acctgggatc ccctgggcct tgtatggggg
      901 tgtcaacatc cagctcaaca cagtgaactt cggagaaccc ccttctatgt ctgccctgga
      961 gaggggaggt ctccacagca gacggctacc tgtggaggac cagagtcata cttctgtgca
     1021 tattggggtt gtgagtcgac tgggtccatc tcctggacgc caccgataaa agatgacctc
     1081 atcaaggtcc aaaggagccc tggatcggaa tcccaaggat gggggtatgg attgcagccc
     1141 aagctggatg caaatgatct tggtgggcca tgttcctcca actgtaaccc cattacagtt
     1201 cagttcaccc ccaagggaaa agaaagcgta ggatgggaaa agggaaagac atggggacta
     1261 agactgtatg tgtctggata tgactatgga gtaatgttta cgatccaact ctctgcccga
     1321 cagggcatgc ctttaggccc caatccagcc ctgccccctg ttggactcac ggtgactcaa
     1381 tcacaaatca cagtccccat ttctcaggaa cttagaccca ggtctgggcc atgggacttg
     1441 cttaaggcca cttacctggt attgaataat tctaaaccag agcttacaag taaatgttgg
     1501 ctctgcttgg atgcccagcc accctattat gaaggaatag ccgttcctgg aaattatacc
     1561 acctctactg acaacaagga ctgtcgttgg cagtatccag gtaaagggag actaacctta
     1621 gagctaattc agggaaaagg actctgcttt gggacaatac cccacaccca tagacattta
     1681 tgtaatagca tccaggaagc cccagacagg gatgcttaca ttataccccc catcaataca
     1741 tggtgggcat gcactactgg gctgacatct tgcatccaca cccaggctct taacctcaca
     1801 aatggatttt gtgtactggt ccagcttgcc cctagaattc ttcgttactc tgatgagatg
     1861 gggaccagac tatctccatt cccagctgct cgagcgaagc gggctactgt tgccgagatc
     1921 ctgggtgcat cagccttcga cttccaagat gagaattata aagtgttaag ctctgccata
     1981 gatgcagatt taatggaact agggaaatcc ttatccaagt ccaaaacctc attaacttct
     2041 ctaagggagg ccacccttcg aaatcagcgg gaacaagact tccaatctct gcaacaggat
     2101 ggactgtgta aacctctgga gaaaaggtgc tgcacctttg tggataactt aaagcatgcg
     2161 agggagttat tggctaaggt gaggaaacgt ctagaagaca ggaaaaggga aatggaacag
     2221 ggtcagcctg tttggattac agttattgca actctgtctg gattcttggg cctggtcata
     2281 ctcattgtga tatgcaagct ctatgttgtt aaccccctga tggattcatc aaggaccagg
     2341 tctccaccat ccgacacgta ttaaaatgct aacccttgga ttctgctcaa gggtttgaga
     2401 tggactctta aggtgagaga gagtgatcct aacttactcc attttaagac aggctgctag
     2461 gtcaggcctt aagtttagtc tcagaaaagc cataaagaat gggcagccaa gccaggcgtg
     2521 gtggcacaca cttttaatcc cagcacttgg gaggcagagg cagacggatt tctgagttcg
     2581 aggccagcct ggtctacagt gagttccagg acagccaagg ctacacagag aaaccctgtc
     2641 tcggaaaaaa aaaagaatgg gctgccaatc cacagccacc ctgacaacgg ggggtggggg
     2701 tggggtagct aaagccaatt tgaagaaagc ccctatgaaa gggcgctttt tccttcaagg
     2761 tacagaccag tccaaaatgt acagacaccc ctcactatga acacaaacaa tcctggtgta
     2821 aattacctaa ctacagttgg aaatctaact ggctttaaaa ggaaaagaga gcctgccgtc
     2881 tctttgtggt tgccatttta tatagatgat atatattgag ctttggtctg ttatgctttg
     2941 gaatgcttag tgcaagccct ggttgcccca gagacccaag tgatgttatg tgaccttgac
     3001 cctaagttac ttctggttgg tgaataaaga tgcctgcagt cgatagctgg gcaggagaga
     3061 ccagggtggg gtttagggtt cctgagcttg gggttgtaag agaagcacca ggagggcgag
     3121 aaggtgaagg gaggaggaag cgggcgtgga ttgggtgagt tgtggaatga tggctatgtg
     3181 ggttggctaa ttggagttaa gagcagccca gatggaaaca tgaggaatta gatgatggct
     3241 tactggctgg ggagtaggca tactagtgta gaggatagat atctgcccag ctcttgtgct
     3301 gattaaggct tgttataaat aaaaag
//
